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Topology/surface rendering

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Topology/surface rendering

Gareth Howell
I am interested in imaging the surface of tissue using the confocal. I have generated a number of data sets that show undulations in the surface. Is there a plugin that would allow me to generate a topology-type rendering/surface rendering and maybe even allow me to pseudocolour different heights in the image with e.g. a rainbow scheme?
Thanks
Gareth
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Re: Topology/surface rendering

David Hovis
I've written a plugin called TopoJ for doing just this. I can send it  
to you when I get back to my computer.

--David

On Jul 3, 2009, at 11:47 AM, Gareth Howell <[hidden email]>  
wrote:

> I am interested in imaging the surface of tissue using the confocal.  
> I have generated a number of data sets that show undulations in the  
> surface. Is there a plugin that would allow me to generate a  
> topology-type rendering/surface rendering and maybe even allow me to  
> pseudocolour different heights in the image with e.g. a rainbow  
> scheme?
> Thanks
> Gareth
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Re: Topology/surface rendering

John Oreopoulos
In reply to this post by Gareth Howell
Try the "Interactive 3D surface plot" plugin that can be downloaded  
on the plugins page of the ImageJ website.

John Oreopoulos


On 3-Jul-09, at 11:47 AM, Gareth Howell wrote:

> I am interested in imaging the surface of tissue using the  
> confocal. I have generated a number of data sets that show  
> undulations in the surface. Is there a plugin that would allow me  
> to generate a topology-type rendering/surface rendering and maybe  
> even allow me to pseudocolour different heights in the image with  
> e.g. a rainbow scheme?
> Thanks
> Gareth