Topology/surface rendering

[Gareth Howell]

I am interested in imaging the surface of tissue using the confocal. I have generated a number of data sets that show undulations in the surface. Is there a plugin that would allow me to generate a topology-type rendering/surface rendering and maybe even allow me to pseudocolour different heights in the image with e.g. a rainbow scheme?
Thanks
Gareth

[David Hovis]

I've written a plugin called TopoJ for doing just this. I can send it  
to you when I get back to my computer.

--David

On Jul 3, 2009, at 11:47 AM, Gareth Howell <[hidden email]>  
wrote:

> I am interested in imaging the surface of tissue using the confocal.  
> I have generated a number of data sets that show undulations in the  
> surface. Is there a plugin that would allow me to generate a  
> topology-type rendering/surface rendering and maybe even allow me to  
> pseudocolour different heights in the image with e.g. a rainbow  
> scheme?
> Thanks
> Gareth

[John Oreopoulos]

Try the "Interactive 3D surface plot" plugin that can be downloaded  
on the plugins page of the ImageJ website.

John Oreopoulos


On 3-Jul-09, at 11:47 AM, Gareth Howell wrote:

> I am interested in imaging the surface of tissue using the  
> confocal. I have generated a number of data sets that show  
> undulations in the surface. Is there a plugin that would allow me  
> to generate a topology-type rendering/surface rendering and maybe  
> even allow me to pseudocolour different heights in the image with  
> e.g. a rainbow scheme?
> Thanks
> Gareth