Dear all,
How to measure the total integral intensity of an image in image J? In the set measurement tab I could find min, max, mean and mode grey value. No option for toal integral intensity. Kindly let me know if anyone has come across the solution. Thanking you Regards, -- Dr. Dipanjana Ghosh Prev: Post doctoral Research Fellow Department of Biological Sciences National University of Singapore Singapore -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Dear Dipanjana,
I'm not an expert, but in the Analyze/Set Measurements... Window one of the parameters you can set is the "Integrated Density", which I think is what you are looking for. At least I think it is the sum of the intensity value of all the pixels within the measured area. Best, Xavi. ___________________________________ *Xavier Sanjuan* Advanced Light Microscopy Unit Parc de Recerca Biomèdica de Barcelona Doctor Aiguader, 88 08003 Barcelona - Spain Tel: + 34 93 316 0195 (ext 1195 dins el PRBB) Fax: + 34 93 316 09 01 E-mail: [hidden email] Web: http://www.crg.eu/en/core/programmes-groups/advanced-light-microscopy-unit Missatge de Dipanjana Ghosh <[hidden email]> del dia dc., 13 de gen. 2021 a les 8:07: > Dear all, > > How to measure the total integral intensity of an image in image J? > In the set measurement tab I could find min, max, mean and mode grey value. > No option for toal integral intensity. > Kindly let me know if anyone has come across the solution. > > Thanking you > > Regards, > -- > Dr. Dipanjana Ghosh > > Prev: Post doctoral Research Fellow > Department of Biological Sciences > National University of Singapore > Singapore > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
In reply to this post by Dipanjana Ghosh
Hej Dipanjana,
"Integrated density" in Set Measurements provides the total intensity. Changing the name to "Total Intensity" might be helpful. "Integrated density" suggests something to do with gels. Jeremy =============================================== B i o V i s P l a t f o r m of Uppsala University Light & EM microscopy / FlowCytometry & Cell Sorting / Image Analysis =============================================== Jeremy Adler PhD - Senior research engineer Light, Confocal Microscopy, Image Analysis E-mail: [hidden email] 070-1679349 Dag Hammarskjölds v 20 751 85 UPPSALA, SWEDEN http://biovis.uu.se/ =============================================== -----Original Message----- From: ImageJ Interest Group <[hidden email]> On Behalf Of Dipanjana Ghosh Sent: Wednesday, January 13, 2021 8:05 AM To: [hidden email] Subject: Total integral intensity measurement Dear all, How to measure the total integral intensity of an image in image J? In the set measurement tab I could find min, max, mean and mode grey value. No option for toal integral intensity. Kindly let me know if anyone has come across the solution. Thanking you Regards, -- Dr. Dipanjana Ghosh Prev: Post doctoral Research Fellow Department of Biological Sciences National University of Singapore Singapore -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Dear Xavi & Jeremy,
Thanks a lot. I was confused whether that one is the correct one. Regards, Dipanjana On Wed, Jan 13, 2021 at 2:50 PM Jeremy Adler <[hidden email]> wrote: > Hej Dipanjana, > > "Integrated density" in Set Measurements provides the total intensity. > > Changing the name to "Total Intensity" might be helpful. > "Integrated density" suggests something to do with gels. > > Jeremy > =============================================== > B i o V i s P l a t f o r m of Uppsala University > Light & EM microscopy / FlowCytometry & Cell Sorting / > Image Analysis > =============================================== > Jeremy Adler PhD - Senior research engineer > Light, Confocal Microscopy, Image Analysis > E-mail: [hidden email] > 070-1679349 > > Dag Hammarskjölds v 20 > 751 85 UPPSALA, SWEDEN > http://biovis.uu.se/ > =============================================== > > > > > > -----Original Message----- > From: ImageJ Interest Group <[hidden email]> On Behalf Of Dipanjana > Ghosh > Sent: Wednesday, January 13, 2021 8:05 AM > To: [hidden email] > Subject: Total integral intensity measurement > > Dear all, > > How to measure the total integral intensity of an image in image J? > In the set measurement tab I could find min, max, mean and mode grey value. > No option for toal integral intensity. > Kindly let me know if anyone has come across the solution. > > Thanking you > > Regards, > -- > Dr. Dipanjana Ghosh > > Prev: Post doctoral Research Fellow > Department of Biological Sciences > National University of Singapore > Singapore > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > > > > > > När du har kontakt med oss på Uppsala universitet med e-post så innebär > det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör > det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ > > E-mailing Uppsala University means that we will process your personal > data. For more information on how this is performed, please read here: > http://www.uu.se/en/about-uu/data-protection-policy > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- Dr. Dipanjana Ghosh Prev: Post doctoral Research Fellow Department of Biological Sciences National University of Singapore Singapore -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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