I recently discovered TrackMate and find it to be a great tracking program. However, when I use “Copy overlay to…” to transfer the tracks to a 3-D image in 3D Viewer, the tracks do not appear. I would like to have a 3D image + Tracks + Spots as shown in the “Examples” on the TrackMate Fiji webpage. How can that be done?
Most likely, this happens because the java3D library is not up to date.
Yo update it, just rely on Benjamin Schmidt and Johannes stuff:
Open a small 3D image (let's say the flybrain in the sample menu) and launch the Plugins > 3D viewer plugin. It should check that you have the right library and if not, install it.
Best
jy
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