Trainable Weka Segmentation in Eclipse

[luckyluke]

Dear ImageJ users,

I am trying to work on weke segmetation plugin of ImageJ in Eclispe, but I am not sure which porjects I should clone with Github..and I faced error while doing someof them

Can osmeone direct me to exact location to Github which I need to download imajeJ and trainable weks segmentation to work with it on Eclipse.
Alternatively, is there nay java source codes which is already exist?

Thanks,

[Ignacio Arganda-Carreras]

Hello "luckyluke",

You can clone the Trainable Weka Segmentation library and plugin from here:

https://github.com/fiji/Trainable_Segmentation

Then, you can easily import the project in Eclipse (Import > Existing Maven
Projects).

You can debug the changes you make in the library or plugin using the
TestGUI class (under src/test/java/).

Let me know if you need more help,

ignacio



On Mon, Sep 29, 2014 at 9:49 AM, luckyluke <
[hidden email]> wrote:

> Dear ImageJ users,
>
> I am trying to work on weke segmetation plugin of ImageJ in Eclispe, but I
> am not sure which porjects I should clone with Github..and I faced error
> while doing someof them
>
> Can osmeone direct me to exact location to Github which I need to download
> imajeJ and trainable weks segmentation to work with it on Eclipse.
> Alternatively, is there nay java source codes which is already exist?
>
> Thanks,
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Trainable-Weka-Segmentation-in-Eclipse-tp5009811.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

... [show rest of quote]

--
Ignacio Arganda-Carreras, Ph.D.
Seung's lab, 46-5065
Department of Brain and Cognitive Sciences
Massachusetts Institute of Technology
43 Vassar St.
Cambridge, MA 02139
USA

Phone: [phone]
Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Jan Eglinger]

Hi luckyluke,

(at tmies, it gtes dfiiflcut to raed yuor mlais when teh letetrs are too
mxied up... ;)

On 29.09.14 09:49, luckyluke wrote:

> Dear ImageJ users,
>
> I am trying to work on weke segmetation plugin of ImageJ in Eclispe, but I
> am not sure which porjects I should clone with Github..and I faced error
> while doing someof them
>
> Can osmeone direct me to exact location to Github which I need to download
> imajeJ and trainable weks segmentation to work with it on Eclipse.
> Alternatively, is there nay java source codes which is already exist?
>

As long as you just want to use ImageJ and Weka Segmentation as a
dependency (and not actually modifying their code to fix bugs, improve
etc.), include them as a dependency in your pom.xml using Maven[1]:

   <dependency>
     <groupId>net.imagej</groupId>
     <artifactId>ij</artifactId>
     <version>1.49e</version>
   </dependency>

   <dependency>
     <groupId>sc.fiji</groupId>
     <artifactId>Trainable_Segmentation</artifactId>
     <version>2.0.0</version>
   </dependency>

Also have a look at the Fiji wiki page about developing in eclipse [2],
and at the minimal-ij1-plugin project:

   https://github.com/imagej/minimal-ij1-plugin

to see how to use pom-imagej as a parent.

Otherwise, if you want to modify the source, just clone the project as
suggested by Ignacio.

Regards,
Jan

[1]: http://fiji.sc/Maven
[2]: http://fiji.sc/Developing_Fiji_in_Eclipse

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