TrakEM2, troubles with opening an existing project

[Alexander V. Kalachev]

Hello all,

I have recently installed Fiji in order to make montage from a grid TEM images with TrakEM2 plugin.
Everything is going well, I can create a new TrakEM2 project, import a grid of images into it and
make a montage. However, when I save this project from the plugin, I cannot open it afterwards. If
I choose project's xml file via 'File-Open' menu, the program opens a window with the contents of
the xml file. The same window comes, if I drag and drop my file onto ImageJ's toolbar. Could anyone
help to solve this problem? I'm running the latest version of Fiji on Debian machine.

Alexander

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[Jörg Hammel]

Hello Alexander,

We also recently had problems opening existing TrakEM files. However, we
always got an error message stating an error in line XX at position xx of
the xml file. Do you get this as well? In our case there was just an invalid
character in one of our file or path names. Thanks to Albert Cordana who
pointed us to this issue we could easily fix it.

Best

                 Jörg

_________________________________________________
Dr. Jörg U. Hammel
Institut für Spezielle Zoologie und Evolutionsbiologie mit Phyletischem
Museum
Erbertstr. 1
07743 Jena

T:  [phone]
M: [hidden email]

www.porifera.net
www.uni-jena.de/szeb.html
-----Ursprüngliche Nachricht-----
Von: ImageJ Interest Group [mailto:[hidden email]] Im Auftrag von
Alexander V. Kalachev
Gesendet: Freitag, 22. Februar 2013 15:28
An: [hidden email]
Betreff: TrakEM2, troubles with opening an existing project

Hello all,

I have recently installed Fiji in order to make montage from a grid TEM
images with TrakEM2 plugin.
Everything is going well, I can create a new TrakEM2 project, import a grid
of images into it and make a montage. However, when I save this project from
the plugin, I cannot open it afterwards. If I choose project's xml file via
'File-Open' menu, the program opens a window with the contents of the xml
file. The same window comes, if I drag and drop my file onto ImageJ's
toolbar. Could anyone help to solve this problem? I'm running the latest
version of Fiji on Debian machine.

Alexander

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[ctrueden]

Hi Alexander,

> I choose project's xml file via 'File-Open' menu

Did you try opening your project via File > Import > TrakEM2 XML?

Regards,
Curtis


On Fri, Feb 22, 2013 at 8:27 AM, Alexander V. Kalachev <
[hidden email]> wrote:

> Hello all,
>
> I have recently installed Fiji in order to make montage from a grid TEM
> images with TrakEM2 plugin.
> Everything is going well, I can create a new TrakEM2 project, import a
> grid of images into it and
> make a montage. However, when I save this project from the plugin, I
> cannot open it afterwards. If
> I choose project's xml file via 'File-Open' menu, the program opens a
> window with the contents of
> the xml file. The same window comes, if I drag and drop my file onto
> ImageJ's toolbar. Could anyone
> help to solve this problem? I'm running the latest version of Fiji on
> Debian machine.
>
> Alexander
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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[Alexander V. Kalachev]

Thanks for the tip! Import works fine.

Alexander

Fri, 22 Feb 2013 09:57:06 -0600
Curtis Rueden <[hidden email]>

> Hi Alexander,
>
> > I choose project's xml file via 'File-Open' menu
>
> Did you try opening your project via File > Import > TrakEM2 XML?
>
> Regards,
> Curtis
>
>
> On Fri, Feb 22, 2013 at 8:27 AM, Alexander V. Kalachev <
> [hidden email]> wrote:
>
> > Hello all,
> >
> > I have recently installed Fiji in order to make montage from a grid TEM
> > images with TrakEM2 plugin.
> > Everything is going well, I can create a new TrakEM2 project, import a
> > grid of images into it and
> > make a montage. However, when I save this project from the plugin, I
> > cannot open it afterwards. If
> > I choose project's xml file via 'File-Open' menu, the program opens a
> > window with the contents of
> > the xml file. The same window comes, if I drag and drop my file onto
> > ImageJ's toolbar. Could anyone
> > help to solve this problem? I'm running the latest version of Fiji on
> > Debian machine.
> >
> > Alexander
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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[Alexander V. Kalachev]

No, I've got no error messages while opening xmls.

Alexander

Fri, 22 Feb 2013 15:49:54 +0100
Jörg Hammel <[hidden email]>

> Hello Alexander,
>
> We also recently had problems opening existing TrakEM files. However, we
> always got an error message stating an error in line XX at position xx of
> the xml file. Do you get this as well? In our case there was just an invalid
> character in one of our file or path names. Thanks to Albert Cordana who
> pointed us to this issue we could easily fix it.
>
> Best
>
>                  Jörg
>
> _________________________________________________
> Dr. Jörg U. Hammel
> Institut für Spezielle Zoologie und Evolutionsbiologie mit Phyletischem
> Museum
> Erbertstr. 1
> 07743 Jena
>
> T:  [phone]
> M: [hidden email]
>
> www.porifera.net
> www.uni-jena.de/szeb.html
> -----Ursprüngliche Nachricht-----
> Von: ImageJ Interest Group [mailto:[hidden email]] Im Auftrag von
> Alexander V. Kalachev
> Gesendet: Freitag, 22. Februar 2013 15:28
> An: [hidden email]
> Betreff: TrakEM2, troubles with opening an existing project
>
> Hello all,
>
> I have recently installed Fiji in order to make montage from a grid TEM
> images with TrakEM2 plugin.
> Everything is going well, I can create a new TrakEM2 project, import a grid
> of images into it and make a montage. However, when I save this project from
> the plugin, I cannot open it afterwards. If I choose project's xml file via
> 'File-Open' menu, the program opens a window with the contents of the xml
> file. The same window comes, if I drag and drop my file onto ImageJ's
> toolbar. Could anyone help to solve this problem? I'm running the latest
> version of Fiji on Debian machine.
>
> Alexander
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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