TrakEM2 update

[Albert Cardona]

Hi all,

A new TrakEM2 release 0.5r, with numerous issues addressed:
http://www.ini.uzh.ch/~acardona/trakem2.html

A class/datastructure diagram for plugin writers:
http://www.ini.uzh.ch/~acardona/img/trakem2_datastructure_diagram.svg

Have a look at snapshots:
http://www.ini.uzh.ch/~acardona/snapshots.html

Next release scheduled for late june, after a two-week hackathon kindly
funded by HHMI at Janelia Farm.

Cheers,

Albert

--
Albert Cardona
http://www.mcdb.ucla.edu/Research/Hartenstein/acardona

[Albert Cardona]

Hi all,

Just fixed plenty of little issues, and implemented measurements using
result tables (finally).
Thank you for the comments and reports!

See 0.5s:
http://www.ini.uzh.ch/~acardona/trakem2.html

And the release notes:
http://www.ini.uzh.ch/~acardona/news.html

Cheers,

Albert

--
Albert Cardona
http://www.mcdb.ucla.edu/Research/Hartenstein/acardona

[Gabriel Landini]

On Friday 30 May 2008 02:38:59 Albert Cardona wrote:
> Just fixed plenty of little issues, and implemented measurements using
> result tables (finally).
> Thank you for the comments and reports!

Hi Albert,
I noted that you updated it to a new version of ImageJ_3D_Viewer plugin. But
that new version still shows a stretched image in my setup.
Have you been able to track down what the problem is?

Cheers,

Gabriel

[Artur Padzik]

Does anyone knows the way to combine (e.g maximal intensity) single
image not belonging to the image stack with all images in the stack.
The point is to have this single image as a background throughout the
time series.The background image should have a different color from the
image stack.
Thanks,

Artur Padzik

[Michael Schmid]

Hi Artur,

Process>Image Calculator can do this.

Select the stack as Image1, and the background as Image2.
The operation useful for you is "Min" or "Max".
When asked "Process all xx Images", click "yes".

Michael
________________________________________________________________

On 30 May 2008, at 14:02, Artur Padzik wrote:

> Does anyone knows the way to combine (e.g maximal intensity) single  
> image not belonging to the image stack with all images in the stack.
> The point is to have this single image as a background throughout  
> the time series.The background image should have a different color  
> from the image stack.
> Thanks,
>
> Artur Padzik

[Albert Cardona]

Hi Gabriel,

> Hi Albert,
> I noted that you updated it to a new version of ImageJ_3D_Viewer plugin. But
> that new version still shows a stretched image in my setup.
> Have you been able to track down what the problem is?
>  


Not really. I know a workaround: calling the following from the jython
interpreter

from java.awt import Dimension
d = Dimension(512,512)
IJ.getCurrentWindow().setMinimumSize(d)
IJ.getCurrentWindow().setPreferredSize(d)

... will at least enable you to resize the window. There is a bizarre
issue going on with java3d and the Canvas3D that I don't (yet)
understand. We'll try to tackle it over the next two weeks.

Albert

--
Albert Cardona
http://www.mcdb.ucla.edu/Research/Hartenstein/acardona