Upgrade of FIJI - unexected outcome

[Colin Rickman-3]

Hi

I just upgraded FIJI to the latest version using the updater. The control window now says OpenSPIM at the top and the dock icon is a breadboard. Closing FIJI and th dock icon goes back to normal. Selecting about ImageJ gives the  following error in a console:

[INFO] Reading IFDs
[INFO] Populating metadata
[INFO] Checking comment style
[WARNING] Expected positive value for PhysicalSizeX; got 0.0
[WARNING] Expected positive value for PhysicalSizeY; got 0.0
[WARNING] Expected positive value for PhysicalSizeX; got 0.0
[WARNING] Expected positive value for PhysicalSizeY; got 0.0

along with the version information 2.0.0-rc-34/1.50a Build 927ecc3c7a

They are also a number of other errors popping up when running plugins although nothing catastrophic. Operating system is OS X 10.10.4.

Colin

--

Dr Colin Rickman
Institute of Biological Chemistry, Biophysics and Bioengineering
School of Engineering and Physical Sciences
Heriot-Watt University
Edinburgh
EH14 4AS

Tel: [phone] (Office)

http://www.rickmanlab.org
http://www.ib3.eps.hw.ac.uk<http://www.ib3.eps.hw.ac.uk/>
http://www.esric.org<http://www.esric.org/>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Jan Eglinger]

Hi Colin,

On 03.08.2015 15:47, Rickman, Colin wrote:
> I just upgraded FIJI to the latest version using the updater. The control window now says OpenSPIM at the top and the dock icon is a breadboard.

It seems that you have activated the OpenSPIM update site.
You can run 'Help > Update...', click on 'Manage update sites' and
uncheck the lines with 'OpenSPIM' (and possibly also
'Micromanager-dev'), then 'Close' and 'Apply changes' to get back to a
"normal" Fiji installation.

Hope that helps,
Jan

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Colin Rickman-3]

Hi Jan

Problem solved. Thanks for your help.

Colin

--

Dr Colin Rickman
Institute of Biological Chemistry, Biophysics and Bioengineering
School of Engineering and Physical Sciences
Heriot-Watt University
Edinburgh
EH14 4AS

Tel: [phone] (Office)

http://www.rickmanlab.org
http://www.ib3.eps.hw.ac.uk<http://www.ib3.eps.hw.ac.uk/>
http://www.esric.org<http://www.esric.org/>


On 3 August 2015 at 16:30:35, Jan Eglinger ([hidden email]<mailto:[hidden email]>) wrote:

Hi Colin,

On 03.08.2015 15:47, Rickman, Colin wrote:
> I just upgraded FIJI to the latest version using the updater. The control window now says OpenSPIM at the top and the dock icon is a breadboard.

It seems that you have activated the OpenSPIM update site.
You can run 'Help > Update...', click on 'Manage update sites' and
uncheck the lines with 'OpenSPIM' (and possibly also
'Micromanager-dev'), then 'Close' and 'Apply changes' to get back to a
"normal" Fiji installation.

Hope that helps,
Jan

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Carmine Pagliaro]

Can anyone help me? thank you very much

2015-08-03 17:33 GMT+02:00 Rickman, Colin <[hidden email]>:

> Hi Jan
>
> Problem solved. Thanks for your help.
>
> Colin
>
> --
>
> Dr Colin Rickman
> Institute of Biological Chemistry, Biophysics and Bioengineering
> School of Engineering and Physical Sciences
> Heriot-Watt University
> Edinburgh
> EH14 4AS
>
> Tel: [phone] (Office)
>
> http://www.rickmanlab.org
> http://www.ib3.eps.hw.ac.uk<http://www.ib3.eps.hw.ac.uk/>
> http://www.esric.org<http://www.esric.org/>
>
>
> On 3 August 2015 at 16:30:35, Jan Eglinger ([hidden email]<mailto:
> [hidden email]>) wrote:
>
> Hi Colin,
>
> On 03.08.2015 15:47, Rickman, Colin wrote:
> > I just upgraded FIJI to the latest version using the updater. The
> control window now says OpenSPIM at the top and the dock icon is a
> breadboard.
>
> It seems that you have activated the OpenSPIM update site.
> You can run 'Help > Update...', click on 'Manage update sites' and
> uncheck the lines with 'OpenSPIM' (and possibly also
> 'Micromanager-dev'), then 'Close' and 'Apply changes' to get back to a
> "normal" Fiji installation.
>
> Hope that helps,
> Jan
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
Carmine Pagliaro
*Life is for sharing.*

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html