Using 3D Manager in macros with batchmode

[Ofra Golani]

Hi,

Is it possible to use 3D Manager in macros in batch mode ?
Specifically how can I  AddImage to the 3D manager and then use Measure3D and Quantif3D in BatchMode ?

Thanks,

Ofra



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[Thomas Boudier-3]

Hi Ofra,

Do you mean using 3DManager in a macro or in batch mode without gui ? In
macro it is working quite well, you can find some examples here :

http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:start

In batch mode, without displaying the ImageJ gui interface, I assume it
should work, never tried ;) .

Best,

Thomas


On 01/10/2015 05:43, Ofra Golani wrote:

> Hi,
>
> Is it possible to use 3D Manager in macros in batch mode ?
> Specifically how can I  AddImage to the 3D manager and then use Measure3D and Quantif3D in BatchMode ?
>
> Thanks,
>
> Ofra
>
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
  /***************************************************************/
       Thomas Boudier, Associate Professor, UPMC,
       Université Pierre et Marie Curie, Paris, France.
       BioInformatics Institute (BII)/IPAL, Singapore.
/**************************************************************/


--
  /***************************************************************/
       Thomas Boudier, Associate Professor, UPMC,
       Université Pierre et Marie Curie, Paris, France.
       BioInformatics Institute (BII)/IPAL, Singapore.
/**************************************************************/

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Rocco D'Antuono]

Dear Thomas, is there in the macro functions a command equivalent to "Live Roi" in the "RoiManager3D 3.6"?
I cannot get exactly the same behaviour simply using "Ext.Manager3D_Select(i)" command.
Thanks,
best regards,
Rocco