Visual programming tool for ImageJ

[Barthel, Kai Uwe]

Hello,

I wanted to announce the release of the first beta release of the  
visual programming framework for ImageJ that I presented at the  
Luxembourg ImageJ conference.

http://imageflow.danielsenff.de/imagej/Imageflow.html

And there is also a short description on how additional units might be  
added:
http://imageflow.danielsenff.de/imagej/Unit%20XML%20Documentation.html

If you got further questions please contact Daniel Senff ([hidden email]
) who has done most of the work during his bachelor thesis.

Best regards
Kai Barthel

[John Oreopoulos]

Great idea, thanks for the release!

Sent from my iPhone

On 2-Mar-09, at 9:17 PM, Kai Barthel <[hidden email]> wrote:

> Hello,
>
> I wanted to announce the release of the first beta release of the  
> visual programming framework for ImageJ that I presented at the  
> Luxembourg ImageJ conference.
>
> http://imageflow.danielsenff.de/imagej/Imageflow.html
>
> And there is also a short description on how additional units might  
> be added:
> http://imageflow.danielsenff.de/imagej/Unit%20XML%20Documentation.html
>
> If you got further questions please contact Daniel Senff ([hidden email]
> ) who has done most of the work during his bachelor thesis.
>
> Best regards
> Kai Barthel

[David Webster]

ImageFlow.zip unzip to a folder called build. Its the contents of this
folder that need to be in a plugins subfolder called ImageFlow. Also, the
documentation was very enlightening.

David Webster

On Mon, Mar 2, 2009 at 6:17 PM, Kai Barthel <[hidden email]>wrote:

> Hello,
>
> I wanted to announce the release of the first beta release of the visual
> programming framework for ImageJ that I presented at the Luxembourg ImageJ
> conference.
>
> http://imageflow.danielsenff.de/imagej/Imageflow.html
>
> And there is also a short description on how additional units might be
> added:
> http://imageflow.danielsenff.de/imagej/Unit%20XML%20Documentation.html
>
> If you got further questions please contact Daniel Senff (
> [hidden email]) who has done most of the work during his bachelor
> thesis.
>
> Best regards
> Kai Barthel
>

[Richard Mort]

Hi,
I was wondering if anyone had ever thought about some kind of session
manager for ImageJ? If one is doing a complicated image analysis that
involves say several image processing steps followed by
quantification/cell tracking etc it would be really helpful if you could
save the 'session' and come back to it later to continue the analysis
and have a record of all the steps/workflow used. I'd imagine it being
non destructive so that you could for example work on a .lif file non
destructively. This can be partly achieved by saving all the commands
you use with the macro recorder so I'm guessing wouldn't be massively
difficult to achieve. Any thoughts?
Richard


--
Dr Richard Mort
MRC Human Genetics Unit
Western General Hospital
Crewe Road
Edinburgh
EH4 2XU, UK.

Phone: [phone] x 3205
Fax: [phone]

[jmutterer]

Richard,
You can try the 'workspaces' macroset. After setting a working directory,
you can save the current open windows, and restore them later.

Jerome

http://rsb.info.nih.gov/ij/macros/Workspaces.txt

On Wed, Jun 3, 2009 at 10:48 AM, Richard Mort <[hidden email]>wrote:

> Hi,
> I was wondering if anyone had ever thought about some kind of session
> manager for ImageJ? If one is doing a complicated image analysis that
> involves say several image processing steps followed by
> quantification/cell tracking etc it would be really helpful if you could
> save the 'session' and come back to it later to continue the analysis
> and have a record of all the steps/workflow used. I'd imagine it being
> non destructive so that you could for example work on a .lif file non
> destructively. This can be partly achieved by saving all the commands
> you use with the macro recorder so I'm guessing wouldn't be massively
> difficult to achieve. Any thoughts?
> Richard
>
>
> --
> Dr Richard Mort
> MRC Human Genetics Unit
> Western General Hospital
> Crewe Road
> Edinburgh
> EH4 2XU, UK.
>
> Phone: [phone] x 3205
> Fax: [phone]
>

[Richard Mort]

Am i right in thinking this first requires all open windows to have been
saved individually?

Jerome Mutterer wrote:

> Richard,
> You can try the 'workspaces' macroset. After setting a working directory,
> you can save the current open windows, and restore them later.
>
> Jerome
>
> http://rsb.info.nih.gov/ij/macros/Workspaces.txt
>
> On Wed, Jun 3, 2009 at 10:48 AM, Richard Mort <[hidden email]>wrote:
>
>> Hi,
>> I was wondering if anyone had ever thought about some kind of session
>> manager for ImageJ? If one is doing a complicated image analysis that
>> involves say several image processing steps followed by
>> quantification/cell tracking etc it would be really helpful if you could
>> save the 'session' and come back to it later to continue the analysis
>> and have a record of all the steps/workflow used. I'd imagine it being
>> non destructive so that you could for example work on a .lif file non
>> destructively. This can be partly achieved by saving all the commands
>> you use with the macro recorder so I'm guessing wouldn't be massively
>> difficult to achieve. Any thoughts?
>> Richard
>>
>>
>> --
>> Dr Richard Mort
>> MRC Human Genetics Unit
>> Western General Hospital
>> Crewe Road
>> Edinburgh
>> EH4 2XU, UK.
>>
>> Phone: [phone] x 3205
>> Fax: [phone]
>>

--
Dr Richard Mort
MRC Human Genetics Unit
Western General Hospital
Crewe Road
Edinburgh
EH4 2XU, UK.

Phone: [phone] x 3205
Fax: [phone]