Loading... |
Reply to author |
Edit post |
Move post |
Delete this post |
Delete this post and replies |
Change post date |
Print post |
Permalink |
Raw mail |
2 posts
|
Dear all,
I am doing simple morphometric analysis on muscle tissue (HE stained). However, I try to make a color segmentation on the tissue according to the area of the muscle fibers. The goal is for the colors to symbolize area ranges of muscle fiber groups. Can you help me with a plugin or paper? I attach an example that illustrates the segmentation of colors according to the area, but in the peripheral nerve (IHC) All opinion welcome, Best regards Paulo Paulo Salinas Institute of Biology Pontificia Universidad Católica de Valparaíso Av.Universidad#330, Curauma, Valparaíso CHILE Fono: +56(32)2274840 [hidden email] www.morpholab.cl -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Loading... |
Reply to author |
Edit post |
Move post |
Delete this post |
Delete this post and replies |
Change post date |
Print post |
Permalink |
Raw mail |
2 posts
|
Thanks!
Attached 10X image file (includes metric bar) Paulo Paulo Salinas Institute of Biología Pontificia Universidad Católica de Valparaíso Av.Universidad#330, Curauma, Valparaíso CHILE Fono: +56(32)2274840 [hidden email] www.morpholab.cl El dom, 13 jun 2021 a las 17:19, Jacqueline Ross (< [hidden email]>) escribió: > Dear Paulo, > > It might help if you post one of your H&E images, preferably the one that > matches the segmentation image you already posted. > > Kind regards, > > Jacqui > ------------------------------ > *From:* ImageJ Interest Group <[hidden email]> on behalf of Paulo > Salinas <[hidden email]> > *Sent:* Monday, 14 June 2021 7:20 AM > *To:* [hidden email] <[hidden email]> > *Subject:* color segmentation by area > > Dear all, > > I am doing simple morphometric analysis on muscle tissue (HE stained). > However, I try to make a color segmentation on the tissue according to the > area of the muscle fibers. > The goal is for the colors to symbolize area ranges of muscle fiber groups. > Can you help me with a plugin or paper? > > I attach an example that illustrates the segmentation of colors according > to the area, but in the peripheral nerve (IHC) > > All opinion welcome, > > Best regards > > Paulo > > > Paulo Salinas > Institute of Biology > Pontificia Universidad Católica de Valparaíso > Av.Universidad#330, Curauma, Valparaíso > CHILE > Fono: +56(32)2274840 > [hidden email] > www.morpholab.cl > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > ... [show rest of quote] ... [show rest of quote] --
ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Loading... |
Reply to author |
Edit post |
Move post |
Delete this post |
Delete this post and replies |
Change post date |
Print post |
Permalink |
Raw mail |
454 posts
|
Dear Paulo,
Not sure if the following plugins do what you want but have a look: https://imagejdocu.tudor.lu/macro/roi_color_coder https://imagej.nih.gov/ij/plugins/fraclac/FLHelp/Colour_Selection_Tree.htm https://imagej.net/plugins/morpholibj#Measurements Best wishes Kees -----Original Message----- From: Paulo Salinas Sent: 13 June 2021 22:28 Subject: Re: color segmentation by area Thanks! Attached 10X image file (includes metric bar) Paulo Paulo Salinas Institute of Biología Pontificia Universidad Católica de Valparaíso Av.Universidad#330, Curauma, Valparaíso CHILE Fono: +56(32)2274840 [hidden email] https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.morpholab.cl%2F&data=04%7C01%7Ckrs5%40leicester.ac.uk%7C02759757063c4db299e308d92eb2a8c9%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637592167158744222%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=GBnmqRT2rpGgoe1wEhMIusdW%2By%2B5SHfjVMMpi5movy4%3D&reserved=0 El dom, 13 jun 2021 a las 17:19, Jacqueline Ross (< [hidden email]>) escribió: > Dear Paulo, > > It might help if you post one of your H&E images, preferably the one > that matches the segmentation image you already posted. > > Kind regards, > > Jacqui > ------------------------------ > *From:* ImageJ Interest Group <[hidden email]> on behalf of Paulo > Salinas <[hidden email]> > *Sent:* Monday, 14 June 2021 7:20 AM > *To:* [hidden email] <[hidden email]> > *Subject:* color segmentation by area > > Dear all, > > I am doing simple morphometric analysis on muscle tissue (HE stained). > However, I try to make a color segmentation on the tissue according to > the area of the muscle fibers. > The goal is for the colors to symbolize area ranges of muscle fiber groups. > Can you help me with a plugin or paper? > > I attach an example that illustrates the segmentation of colors > according to the area, but in the peripheral nerve (IHC) > > All opinion welcome, > > Best regards > > Paulo > > > Paulo Salinas > Institute of Biology > Pontificia Universidad Católica de Valparaíso Av.Universidad#330, > Curauma, Valparaíso CHILE > Fono: +56(32)2274840 > [hidden email] > https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.m > orpholab.cl%2F&data=04%7C01%7Ckrs5%40leicester.ac.uk%7C02759757063 > c4db299e308d92eb2a8c9%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637 > 592167158744222%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2 > luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=GBnmqRT2rpGgoe1w > EhMIusdW%2By%2B5SHfjVMMpi5movy4%3D&reserved=0 > > -- > ImageJ mailing list: > https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimage > j.nih.gov%2Fij%2Flist.html&data=04%7C01%7Ckrs5%40leicester.ac.uk%7 > C02759757063c4db299e308d92eb2a8c9%7Caebecd6a31d44b0195ce8274afe853d9%7 > C0%7C0%7C637592167158744222%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMD > AiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=sFVL > Zvf0AdoUFOlJiFIdW23HEFIK1yTvDJF6Pil5hkA%3D&reserved=0 > ... [show rest of quote] -- ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&data=04%7C01%7Ckrs5%40leicester.ac.uk%7C02759757063c4db299e308d92eb2a8c9%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637592167158744222%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=sFVLZvf0AdoUFOlJiFIdW23HEFIK1yTvDJF6Pil5hkA%3D&reserved=0 -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Free forum by Nabble | Disable Popup Ads | Edit this page |