depth of focus plugin

[Dimitri Vanhecke-2]

Dear ImageJ users,

I am looking for an ImageJ plugin tool that can blend the focused areas
of a focus stack (with partially focused images) into one focused image
(i.e. an increase of depth of field).There exist proprietary software
(Helicon Focus) and OpenSource (CombineZM), but I need an (platform
independent) ImageJ plugin.

Any suggestions are welcome,

Dimitri Vanhecke


--
Dimitri Vanhecke
Max Planck Institute for Biochemistry
Dept. of Molecular Structural Biology
Am Klopferspitz 18
D-82152 Martinsried Deutschland
phone: [phone]

[Jan Eglinger-5]

Hi Dimitri,

Dimitri Vanhecke wrote:
> I am looking for an ImageJ plugin tool that can blend the focused areas
> of a focus stack (with partially focused images) into one focused image
> (i.e. an increase of depth of field).There exist proprietary software
> (Helicon Focus) and OpenSource (CombineZM), but I need an (platform
> independent) ImageJ plugin.
>
There is an Extended Depth of Field plugin here:
http://bigwww.epfl.ch/demo/edf/index.html

Hth,
jan

[Gabriel Landini]

On Wednesday 14 October 2009  16:03:15 Dimitri Vanhecke wrote:
> I am looking for an ImageJ plugin tool that can blend the focused areas
> of a focus stack (with partially focused images) into one focused image
> (i.e. an increase of depth of field).There exist proprietary software
> (Helicon Focus) and OpenSource (CombineZM), but I need an (platform
> independent) ImageJ plugin.
>
> Any suggestions are welcome,

Google: imageJ extended depth field

Everybody should do this before asking in the list...
BTW is not depth of focus, it is depth of field.

G

[Joel Sheffield]

There is also a simple plugin called "stack focusser" that might
work.

> Hi Dimitri,
>
> Dimitri Vanhecke wrote:
> > I am looking for an ImageJ plugin tool that can blend the focused
> areas
> > of a focus stack (with partially focused images) into one focused
> image
> > (i.e. an increase of depth of field).There exist proprietary
> software
> > (Helicon Focus) and OpenSource (CombineZM), but I need an
> (platform
> > independent) ImageJ plugin.
> >
> There is an Extended Depth of Field plugin here:
> http://bigwww.epfl.ch/demo/edf/index.html
>
> Hth,
> jan

--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
[hidden email]  
[phone], fax [phone]
http://astro.temple.edu/~jbs

[dpoburko]

Have you checked out the Extended Depth of Field plugin?
http://bigwww.epfl.ch/demo/edf/
It sounds like it will do what you're looking for.

Cheers,
Damon

--

Damon Poburko, PhD
Postdoctoral Research Fellow
Stanford University School of Medicine
Dept. of Molecular & Cellular Physiology
279 Campus Dr., Beckman B103, Stanford, CA 94305
Ph: 650 725 7564, fax: [phone]




Dimitri Vanhecke wrote:

> Dear ImageJ users,
>
> I am looking for an ImageJ plugin tool that can blend the focused
> areas of a focus stack (with partially focused images) into one
> focused image (i.e. an increase of depth of field).There exist
> proprietary software (Helicon Focus) and OpenSource (CombineZM), but I
> need an (platform independent) ImageJ plugin.
>
> Any suggestions are welcome,
>
> Dimitri Vanhecke
>
>

[David Webster]

Also, check my favorite, Wikipedia

On Wed, Oct 14, 2009 at 1:21 AM, Dimitri Vanhecke <[hidden email]>wrote:

> Dear ImageJ users,
>
> I am looking for an ImageJ plugin tool that can blend the focused areas of
> a focus stack (with partially focused images) into one focused image (i.e.
> an increase of depth of field).There exist proprietary software (Helicon
> Focus) and OpenSource (CombineZM), but I need an (platform independent)
> ImageJ plugin.
>
> Any suggestions are welcome,
>
> Dimitri Vanhecke
>
>
> --
> Dimitri Vanhecke
> Max Planck Institute for Biochemistry Dept. of Molecular Structural Biology
> Am Klopferspitz 18 D-82152 Martinsried Deutschland phone: [phone]
>