error in Fiji documentation
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Hi all,
I was trying to find the documentation for the BF (bio-formats) class by using the macro editor, then Tools > Open Help for Class. That takes me to this non-existent webpage: http://fiji.sc/javadoc/loci/plugins/BF.html It did tell me what I needed to know (its location in the hierarchy), but the intended behavior is probably for that webpage to exist. =) Thanks, Juan. -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Juan,
On Thu, 25 Jul 2013, Juan Nunez-Iglesias wrote: > I was trying to find the documentation for the BF (bio-formats) class by > using the macro editor, then Tools > Open Help for Class. That takes me > to this non-existent webpage: > > http://fiji.sc/javadoc/loci/plugins/BF.html > > It did tell me what I needed to know (its location in the hierarchy), > but the intended behavior is probably for that webpage to exist. =) This is indeed unintended behavior (but I knew about it for a long time, just waited for somebody to need it badly enough so that I could address more pressing things in the meantime). The reason is that we no longer build Fiji from scratch, but rely on pre-compiled third-party components. The side effect is that we can no longer build a completely unified Javadoc, so for the moment, http://fiji.sc/javadoc/ only contains documentation for the classes defined in Fiji's source code (https://github.com/fiji/fiji). I will install redirects for the most important components such as ImageJ 1.x, ImgLib2, ImageJ 2 and Bio-Formats today (I just cannot take care of that right now: I am typing this on a phone). Ciao, Johannes -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Thanks Johannes!
On Fri, Jul 26, 2013 at 12:06 AM, Johannes Schindelin < [hidden email]> wrote: > Hi Juan, > > On Thu, 25 Jul 2013, Juan Nunez-Iglesias wrote: > > > I was trying to find the documentation for the BF (bio-formats) class by > > using the macro editor, then Tools > Open Help for Class. That takes me > > to this non-existent webpage: > > > > http://fiji.sc/javadoc/loci/plugins/BF.html > > > > It did tell me what I needed to know (its location in the hierarchy), > > but the intended behavior is probably for that webpage to exist. =) > > This is indeed unintended behavior (but I knew about it for a long time, > just waited for somebody to need it badly enough so that I could address > more pressing things in the meantime). > > The reason is that we no longer build Fiji from scratch, but rely on > pre-compiled third-party components. The side effect is that we can no > longer build a completely unified Javadoc, so for the moment, > http://fiji.sc/javadoc/ only contains documentation for the classes > defined in Fiji's source code (https://github.com/fiji/fiji). > > I will install redirects for the most important components such as ImageJ > 1.x, ImgLib2, ImageJ 2 and Bio-Formats today (I just cannot take care of > that right now: I am typing this on a phone). > > Ciao, > Johannes > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Johannes,
I guess this fell by the wayside? The BF class documentation is still nowhere to be found... Thanks, Juan. On Mon, Jul 29, 2013 at 7:06 PM, Juan Nunez-Iglesias <[hidden email]>wrote: > Thanks Johannes! > > > On Fri, Jul 26, 2013 at 12:06 AM, Johannes Schindelin < > [hidden email]> wrote: > >> Hi Juan, >> >> On Thu, 25 Jul 2013, Juan Nunez-Iglesias wrote: >> >> > I was trying to find the documentation for the BF (bio-formats) class by >> > using the macro editor, then Tools > Open Help for Class. That takes me >> > to this non-existent webpage: >> > >> > http://fiji.sc/javadoc/loci/plugins/BF.html >> > >> > It did tell me what I needed to know (its location in the hierarchy), >> > but the intended behavior is probably for that webpage to exist. =) >> >> This is indeed unintended behavior (but I knew about it for a long time, >> just waited for somebody to need it badly enough so that I could address >> more pressing things in the meantime). >> >> The reason is that we no longer build Fiji from scratch, but rely on >> pre-compiled third-party components. The side effect is that we can no >> longer build a completely unified Javadoc, so for the moment, >> http://fiji.sc/javadoc/ only contains documentation for the classes >> defined in Fiji's source code (https://github.com/fiji/fiji). >> >> I will install redirects for the most important components such as ImageJ >> 1.x, ImgLib2, ImageJ 2 and Bio-Formats today (I just cannot take care of >> that right now: I am typing this on a phone). >> >> Ciao, >> Johannes >> > > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Juan,
On 19.02.2014, 11:38 AM, Juan Nunez-Iglesias wrote: > I guess this fell by the wayside? The BF class documentation is still > nowhere to be found... I guess you could just clone the source code repository: https://github.com/openmicroscopy/bioformats and generate the javadoc for yourself, but for what it's worth, I've found the javadoc of the BF class here: http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/javadoc/index.html?loci/plugins/BF.html Hope that helps, Jan > > > On Mon, Jul 29, 2013 at 7:06 PM, Juan Nunez-Iglesias <[hidden email]>wrote: > >> Thanks Johannes! >> >> >> On Fri, Jul 26, 2013 at 12:06 AM, Johannes Schindelin < >> [hidden email]> wrote: >> >>> Hi Juan, >>> >>> On Thu, 25 Jul 2013, Juan Nunez-Iglesias wrote: >>> >>>> I was trying to find the documentation for the BF (bio-formats) class by >>>> using the macro editor, then Tools > Open Help for Class. That takes me >>>> to this non-existent webpage: >>>> >>>> http://fiji.sc/javadoc/loci/plugins/BF.html >>>> >>>> It did tell me what I needed to know (its location in the hierarchy), >>>> but the intended behavior is probably for that webpage to exist. =) >>> >>> This is indeed unintended behavior (but I knew about it for a long time, >>> just waited for somebody to need it badly enough so that I could address >>> more pressing things in the meantime). >>> >>> The reason is that we no longer build Fiji from scratch, but rely on >>> pre-compiled third-party components. The side effect is that we can no >>> longer build a completely unified Javadoc, so for the moment, >>> http://fiji.sc/javadoc/ only contains documentation for the classes >>> defined in Fiji's source code (https://github.com/fiji/fiji). >>> >>> I will install redirects for the most important components such as ImageJ >>> 1.x, ImgLib2, ImageJ 2 and Bio-Formats today (I just cannot take care of >>> that right now: I am typing this on a phone). >>> >>> Ciao, >>> Johannes >>> >> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Jan, Juan and everyone,
> for what it's worth, I've found the javadoc of the BF class To make this easier, I set up the following URL a while back: http://javadoc.imagej.net/ It has links to the Javadoc of SciJava-related [1] projects. Let me know if there are any additional projects you'd like to see listed there. Regards, Curtis [1] http://scijava.org/ On Wed, Feb 19, 2014 at 5:55 AM, Jan Eglinger <[hidden email]>wrote: > Hi Juan, > > > On 19.02.2014, 11:38 AM, Juan Nunez-Iglesias wrote: > >> I guess this fell by the wayside? The BF class documentation is still >> nowhere to be found... >> > > I guess you could just clone the source code repository: > > https://github.com/openmicroscopy/bioformats > > and generate the javadoc for yourself, but for what it's worth, I've found > the javadoc of the BF class here: > > http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/ > javadoc/index.html?loci/plugins/BF.html > > > Hope that helps, > Jan > > > > >> >> On Mon, Jul 29, 2013 at 7:06 PM, Juan Nunez-Iglesias <[hidden email] >> >wrote: >> >> Thanks Johannes! >>> >>> >>> On Fri, Jul 26, 2013 at 12:06 AM, Johannes Schindelin < >>> [hidden email]> wrote: >>> >>> Hi Juan, >>>> >>>> On Thu, 25 Jul 2013, Juan Nunez-Iglesias wrote: >>>> >>>> I was trying to find the documentation for the BF (bio-formats) class >>>>> by >>>>> using the macro editor, then Tools > Open Help for Class. That takes me >>>>> to this non-existent webpage: >>>>> >>>>> http://fiji.sc/javadoc/loci/plugins/BF.html >>>>> >>>>> It did tell me what I needed to know (its location in the hierarchy), >>>>> but the intended behavior is probably for that webpage to exist. =) >>>>> >>>> >>>> This is indeed unintended behavior (but I knew about it for a long time, >>>> just waited for somebody to need it badly enough so that I could address >>>> more pressing things in the meantime). >>>> >>>> The reason is that we no longer build Fiji from scratch, but rely on >>>> pre-compiled third-party components. The side effect is that we can no >>>> longer build a completely unified Javadoc, so for the moment, >>>> http://fiji.sc/javadoc/ only contains documentation for the classes >>>> defined in Fiji's source code (https://github.com/fiji/fiji). >>>> >>>> I will install redirects for the most important components such as >>>> ImageJ >>>> 1.x, ImgLib2, ImageJ 2 and Bio-Formats today (I just cannot take care of >>>> that right now: I am typing this on a phone). >>>> >>>> Ciao, >>>> Johannes >>>> >>>> >>> > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Thanks, Jan, for finding exactly what I was looking for, and Curtis, for
setting up that very useful links page! Juan. On Wed, Feb 19, 2014 at 11:33 PM, Curtis Rueden <[hidden email]> wrote: > Hi Jan, Juan and everyone, > > > for what it's worth, I've found the javadoc of the BF class > > To make this easier, I set up the following URL a while back: > http://javadoc.imagej.net/ > > It has links to the Javadoc of SciJava-related [1] projects. Let me know if > there are any additional projects you'd like to see listed there. > > Regards, > Curtis > > [1] http://scijava.org/ > > > On Wed, Feb 19, 2014 at 5:55 AM, Jan Eglinger <[hidden email] > >wrote: > > > Hi Juan, > > > > > > On 19.02.2014, 11:38 AM, Juan Nunez-Iglesias wrote: > > > >> I guess this fell by the wayside? The BF class documentation is still > >> nowhere to be found... > >> > > > > I guess you could just clone the source code repository: > > > > https://github.com/openmicroscopy/bioformats > > > > and generate the javadoc for yourself, but for what it's worth, I've > found > > the javadoc of the BF class here: > > > > http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/ > > javadoc/index.html?loci/plugins/BF.html > > > > > > Hope that helps, > > Jan > > > > > > > > > >> > >> On Mon, Jul 29, 2013 at 7:06 PM, Juan Nunez-Iglesias < > [hidden email] > >> >wrote: > >> > >> Thanks Johannes! > >>> > >>> > >>> On Fri, Jul 26, 2013 at 12:06 AM, Johannes Schindelin < > >>> [hidden email]> wrote: > >>> > >>> Hi Juan, > >>>> > >>>> On Thu, 25 Jul 2013, Juan Nunez-Iglesias wrote: > >>>> > >>>> I was trying to find the documentation for the BF (bio-formats) class > >>>>> by > >>>>> using the macro editor, then Tools > Open Help for Class. That takes > me > >>>>> to this non-existent webpage: > >>>>> > >>>>> http://fiji.sc/javadoc/loci/plugins/BF.html > >>>>> > >>>>> It did tell me what I needed to know (its location in the hierarchy), > >>>>> but the intended behavior is probably for that webpage to exist. =) > >>>>> > >>>> > >>>> This is indeed unintended behavior (but I knew about it for a long > time, > >>>> just waited for somebody to need it badly enough so that I could > address > >>>> more pressing things in the meantime). > >>>> > >>>> The reason is that we no longer build Fiji from scratch, but rely on > >>>> pre-compiled third-party components. The side effect is that we can no > >>>> longer build a completely unified Javadoc, so for the moment, > >>>> http://fiji.sc/javadoc/ only contains documentation for the classes > >>>> defined in Fiji's source code (https://github.com/fiji/fiji). > >>>> > >>>> I will install redirects for the most important components such as > >>>> ImageJ > >>>> 1.x, ImgLib2, ImageJ 2 and Bio-Formats today (I just cannot take care > of > >>>> that right now: I am typing this on a phone). > >>>> > >>>> Ciao, > >>>> Johannes > >>>> > >>>> > >>> > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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