image J nd stack builder plugin

[vs11]

>
> HI I am using the nd Stack builder plugin on a data set collected  
> with metamorph Multidimensional acquisition. Image J 1.41 just says  
> done and does not make the z projected stack. The data set is a 2  
> color 15 Z stacks time lapse experiment.
>  I am using a Power Book G4 1.67Ghz 2GB RAM running leopard. The  
> same data set works fine on PC's. I could use the plugin earlier  
> when I was just doing one color  (1GB Total RAM) and everything  
> worked fine. Tried it on the new Mac Pro unibody with 2.4Ghz 4GB RAM  
> and have the same problem. I have tried reducing the number of time  
> points with the same result. I have increased the memory to 75% of  
> the real RAM and it still does not work. One difference is that the  
> new file names are longer when you use 2 colors but Leopard should  
> be able to deal with 255 characters in file names unlike older OS  
> which would only  take 35 characters.
>
> Any solutions other than the nd stack builder? Does anyone else have  
> the same problem. I am using Java 1.5 or that is what Image J says.
>
> vinay
>
>
>
>

[Fabrice Cordelières]

Dear Vinay,

Metamorph has been changing the format of the nd file: I've updated  
the nd stack builder plugin so that it handles both old and new  
version, but didn't released it yet. I'll send it to you off-list.

Fabrice


Le 16 févr. 09 à 21:44, Vinay Singh a écrit :

>>
>> HI I am using the nd Stack builder plugin on a data set collected  
>> with metamorph Multidimensional acquisition. Image J 1.41 just says  
>> done and does not make the z projected stack. The data set is a 2  
>> color 15 Z stacks time lapse experiment.
>> I am using a Power Book G4 1.67Ghz 2GB RAM running leopard. The  
>> same data set works fine on PC's. I could use the plugin earlier  
>> when I was just doing one color  (1GB Total RAM) and everything  
>> worked fine. Tried it on the new Mac Pro unibody with 2.4Ghz 4GB  
>> RAM and have the same problem. I have tried reducing the number of  
>> time points with the same result. I have increased the memory to  
>> 75% of the real RAM and it still does not work. One difference is  
>> that the new file names are longer when you use 2 colors but  
>> Leopard should be able to deal with 255 characters in file names  
>> unlike older OS which would only  take 35 characters.
>>
>> Any solutions other than the nd stack builder? Does anyone else  
>> have the same problem. I am using Java 1.5 or that is what Image J  
>> says.
>>
>> vinay
>>
>>
>>
>>
>

Fabrice Cordelières, PhD

Institut Curie - Section de recherche/ CNRS UMR 146
Plateforme d'Imagerie Cellulaire et Tissulaire
Bâtiment 112 - Centre universitaire
91405 Orsay Cedex
FRANCE

Tél. : [phone]
Fax. : [phone]

Consultez mes disponibilités sur http://www.google.com/calendar/embed?src=fabrice.cordelieres%40gmail.com

[ctrueden]

Hi Vinay,

Any solutions other than the nd stack builder?
>>
>
Bio-Formats includes support for Metamorph's ND format. Give it a shot and
let us know if you run into any problems. We are very interested in
non-working sample data, especially if Metamorph has been changing the ND
format lately.

http://www.loci.wisc.edu/ome/formats-imagej.html

Cheers,
Curtis

On Mon, Feb 16, 2009 at 2:44 PM, Vinay Singh <[hidden email]> wrote:

>
>> HI I am using the nd Stack builder plugin on a data set collected with
>> metamorph Multidimensional acquisition. Image J 1.41 just says done and does
>> not make the z projected stack. The data set is a 2 color 15 Z stacks time
>> lapse experiment.
>>  I am using a Power Book G4 1.67Ghz 2GB RAM running leopard. The same data
>> set works fine on PC's. I could use the plugin earlier when I was just doing
>> one color  (1GB Total RAM) and everything worked fine. Tried it on the new
>> Mac Pro unibody with 2.4Ghz 4GB RAM and have the same problem. I have tried
>> reducing the number of time points with the same result. I have increased
>> the memory to 75% of the real RAM and it still does not work. One difference
>> is that the new file names are longer when you use 2 colors but Leopard
>> should be able to deal with 255 characters in file names unlike older OS
>> which would only  take 35 characters.
>>
>> Any solutions other than the nd stack builder? Does anyone else have the
>> same problem. I am using Java 1.5 or that is what Image J says.
>>
>> vinay
>>
>>
>>
>>
>>