image - convert does not do anything
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image - convert does not do anything
 
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Hello everyone.
I'm not actual ImageJ user but IT support and I have a client that is trying to convert one image to another form using fiji imageJ, and process should be as easy as file - open, image - type - 8-bit, image -convert. However result is "A ImgPlus is required but none exist" According to her everything worked just about two months ago. I have hard time finding what that "convert" even should be doing, it isn't in documentation, no youtube tutorials even have it in that menu so I really don't have any clue how to debug this problem. I'm basically giving myself a real crash course of ImageJ at this point. Any ideas, clue,s anything? Timo Pietilä -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Greetings Timo,
it would help, if you could tell us by which means* your client tries to perform the image type conversion and which kind of image she starts from, i.e. where does the original image come from, which suffix does it have and which bit-depth. *) ImageJ means: ImageJ GUI use ImageJ macro use ImageJ plugin use Regards Herbie :::::::::::::::::::::::::::::::::::::::::: Am 14.10.20 um 06:48 schrieb Timo Pietilä: > Hello everyone. > > I'm not actual ImageJ user but IT support and I have a client that is > trying to convert one image to another form using fiji imageJ, and > process should be as easy as > > file - open, > image - type - 8-bit, > image -convert. > > However result is "A ImgPlus is required but none exist" > > According to her everything worked just about two months ago. > > I have hard time finding what that "convert" even should be doing, it > isn't in documentation, no youtube tutorials even have it in that menu > so I really don't have any clue how to debug this problem. > > I'm basically giving myself a real crash course of ImageJ at this point. > > Any ideas, clue,s anything? > > Timo Pietilä > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Timo Pietilä
Suggestion:
Perhaps your client uses the ImageJ-menu command: Process >> Batch >> Convert... that is described in the ImageJ user-guide (subsection "29.12.2 Convert…"): <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> Regards Herbie :::::::::::::::::::::::::::::::::::::::::: Am 14.10.20 um 06:48 schrieb Timo Pietilä: > Hello everyone. > > I'm not actual ImageJ user but IT support and I have a client that is > trying to convert one image to another form using fiji imageJ, and > process should be as easy as > > file - open, > image - type - 8-bit, > image -convert. > > However result is "A ImgPlus is required but none exist" > > According to her everything worked just about two months ago. > > I have hard time finding what that "convert" even should be doing, it > isn't in documentation, no youtube tutorials even have it in that menu > so I really don't have any clue how to debug this problem. > > I'm basically giving myself a real crash course of ImageJ at this point. > > Any ideas, clue,s anything? > > Timo Pietilä > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: image - convert does not do anything
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No, there is just plain convert at the four bottom items at image -menu.
That's the one she tried to use and which gives that error. I can replicate the error in my own work machine. I'm at home now, so can't remember what the other three were, however none of those are documented in documentation. In fact that menu is quite a bit longer than the one described in documentation. More than four items are missing from there. When I get to work machine I can post what it looks like in my machine. Timo Pietilä On 14.10.2020 12.37, Herbie wrote: > Suggestion: > > Perhaps your client uses the ImageJ-menu command: > > Process >> Batch >> Convert... > > that is described in the ImageJ user-guide (subsection "29.12.2 Convert…"): > <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> > > Regards > > Herbie > > :::::::::::::::::::::::::::::::::::::::::: > Am 14.10.20 um 06:48 schrieb Timo Pietilä: >> Hello everyone. >> >> I'm not actual ImageJ user but IT support and I have a client that is >> trying to convert one image to another form using fiji imageJ, and >> process should be as easy as >> >> file - open, >> image - type - 8-bit, >> image -convert. >> >> However result is "A ImgPlus is required but none exist" >> >> According to her everything worked just about two months ago. >> >> I have hard time finding what that "convert" even should be doing, it >> isn't in documentation, no youtube tutorials even have it in that menu >> so I really don't have any clue how to debug this problem. >> >> I'm basically giving myself a real crash course of ImageJ at this point. >> >> Any ideas, clue,s anything? >> >> Timo Pietilä >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Timo,
The IMAGE/Type/8-bit menu item in itself performs the conversion to 8-bit. You might want to uncheck the EDIT/Options/Conversions default of "scale when converting" if you need to preserve the data range (else it will scale the results to fit your requested range). You can record the steps using the macro recorder and just run the script as needed. open(); run("Conversions...", " "); run("8-bit"); Hope that clears things up. On 10/14/2020 8:14 AM, Timo Pietilä wrote: > No, there is just plain convert at the four bottom items at image > -menu. That's the one she tried to use and which gives that error. I > can replicate the error in my own work machine. > > I'm at home now, so can't remember what the other three were, however > none of those are documented in documentation. > > In fact that menu is quite a bit longer than the one described in > documentation. More than four items are missing from there. > > When I get to work machine I can post what it looks like in my machine. > > Timo Pietilä > > On 14.10.2020 12.37, Herbie wrote: >> Suggestion: >> >> Perhaps your client uses the ImageJ-menu command: >> >> Process >> Batch >> Convert... >> >> that is described in the ImageJ user-guide (subsection >> "29.12.2 Convert…"): >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__imagej.nih.gov_ij_docs_guide_146-2D29.html-23toc-2DSubsection-2D29.12&d=DwIDaQ&c=Nd1gv_ZWYNIRyZYZmXb18oVfc3lTqv2smA_esABG70U&r=pD-sSh_e9cMzytxHgN9Gfakl4sCheZunFOz7i3o-Ewk&m=zdqanvIPyTaCqonXBcO_-jlhlkBKAPUkeBPY6DRF5uo&s=EUgf4nj7jdM89ScI31aeE7uhVX6FaHVEzQ5AoWs5Aq8&e=> >> >> >> Regards >> >> Herbie >> >> :::::::::::::::::::::::::::::::::::::::::: >> Am 14.10.20 um 06:48 schrieb Timo Pietilä: >>> Hello everyone. >>> >>> I'm not actual ImageJ user but IT support and I have a client that >>> is trying to convert one image to another form using fiji imageJ, >>> and process should be as easy as >>> >>> file - open, >>> image - type - 8-bit, >>> image -convert. >>> >>> However result is "A ImgPlus is required but none exist" >>> >>> According to her everything worked just about two months ago. >>> >>> I have hard time finding what that "convert" even should be doing, >>> it isn't in documentation, no youtube tutorials even have it in that >>> menu so I really don't have any clue how to debug this problem. >>> >>> I'm basically giving myself a real crash course of ImageJ at this >>> point. >>> >>> Any ideas, clue,s anything? >>> >>> Timo Pietilä >>> >>> -- >>> ImageJ mailing list: >>> https://urldefense.proofpoint.com/v2/url?u=http-3A__imagej.nih.gov_ij_list.html&d=DwIDaQ&c=Nd1gv_ZWYNIRyZYZmXb18oVfc3lTqv2smA_esABG70U&r=pD-sSh_e9cMzytxHgN9Gfakl4sCheZunFOz7i3o-Ewk&m=zdqanvIPyTaCqonXBcO_-jlhlkBKAPUkeBPY6DRF5uo&s=h0xXJqoMNz7f-UaosEmMw9m3Fp3af5DztZkx53NjVlo&e= >> > > -- > ImageJ mailing list: > https://urldefense.proofpoint.com/v2/url?u=http-3A__imagej.nih.gov_ij_list.html&d=DwIDaQ&c=Nd1gv_ZWYNIRyZYZmXb18oVfc3lTqv2smA_esABG70U&r=pD-sSh_e9cMzytxHgN9Gfakl4sCheZunFOz7i3o-Ewk&m=zdqanvIPyTaCqonXBcO_-jlhlkBKAPUkeBPY6DRF5uo&s=h0xXJqoMNz7f-UaosEmMw9m3Fp3af5DztZkx53NjVlo&e= -- __ Vytas Bindokas, M.S., Ph.D. Research Assoc. Prof., Director, BSD Light Microscopy Core Facility phone: 773-702-4875 [alt's: 773-834-9040 or 773-834-2639] [address for letters ONLY (see shipping addr below):] Dept Pharmacol Physiol Sci MC0926 947 E 58th Street The University of Chicago Chicago IL 60637 Room Abbott 129 shipping address (main KCBD site): V. Bindokas 900 E 57th Street KCBD room 1250, Microscopy Core The University of Chicago Chicago IL 60637 email [hidden email] web site for LMCF: http://digital.uchicago.edu -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: image - convert does not do anything
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In reply to this post by Timo Pietilä
Dear Timo,
From what you are describing I have really hard time to understand what you are trying to do. Could you please go to Plugins>Macros>Record... try again your wished workflow and send us the generated code? Put maybe the used picture as available. And very stupid question: are you using an up to date version of ImageJ (Help>Update_UmageJ...)? My best regards, Philippe Philippe CARL Laboratoire de Bioimagerie et Pathologies UMR 7021 CNRS - Université de Strasbourg Faculté de Pharmacie 74 route du Rhin 67401 ILLKIRCH Tel : +33(0)3 68 85 42 89 ----- Mail original ----- De: "Timo Pietilä" <[hidden email]> À: "imagej" <[hidden email]> Envoyé: Mercredi 14 Octobre 2020 15:14:45 Objet: Re: image - convert does not do anything No, there is just plain convert at the four bottom items at image -menu. That's the one she tried to use and which gives that error. I can replicate the error in my own work machine. I'm at home now, so can't remember what the other three were, however none of those are documented in documentation. In fact that menu is quite a bit longer than the one described in documentation. More than four items are missing from there. When I get to work machine I can post what it looks like in my machine. Timo Pietilä On 14.10.2020 12.37, Herbie wrote: > Suggestion: > > Perhaps your client uses the ImageJ-menu command: > > Process >> Batch >> Convert... > > that is described in the ImageJ user-guide (subsection "29.12.2 Convert…"): > <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> > > Regards > > Herbie > > :::::::::::::::::::::::::::::::::::::::::: > Am 14.10.20 um 06:48 schrieb Timo Pietilä: >> Hello everyone. >> >> I'm not actual ImageJ user but IT support and I have a client that is >> trying to convert one image to another form using fiji imageJ, and >> process should be as easy as >> >> file - open, >> image - type - 8-bit, >> image -convert. >> >> However result is "A ImgPlus is required but none exist" >> >> According to her everything worked just about two months ago. >> >> I have hard time finding what that "convert" even should be doing, it >> isn't in documentation, no youtube tutorials even have it in that menu >> so I really don't have any clue how to debug this problem. >> >> I'm basically giving myself a real crash course of ImageJ at this point. >> >> Any ideas, clue,s anything? >> >> Timo Pietilä >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: image - convert does not do anything
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In reply to this post by vbindokas
"A ImgPlus is required but none exist"
Is this the exact error message? If so, this is not a text from the original ImageJ source. Could it be that a custom plugin is installed? On 14.10.2020 15:31, vbindokas wrote: > Hi Timo, > > The IMAGE/Type/8-bit menu item in itself performs the conversion to > 8-bit. You might want to uncheck the EDIT/Options/Conversions default > of "scale when converting" if you need to preserve the data range > (else it will scale the results to fit your requested range). > > You can record the steps using the macro recorder and just run the > script as needed. > > open(); > run("Conversions...", " "); > run("8-bit"); > > Hope that clears things up. > > > > On 10/14/2020 8:14 AM, Timo Pietilä wrote: >> No, there is just plain convert at the four bottom items at image >> -menu. That's the one she tried to use and which gives that error. I >> can replicate the error in my own work machine. >> >> I'm at home now, so can't remember what the other three were, however >> none of those are documented in documentation. >> >> In fact that menu is quite a bit longer than the one described in >> documentation. More than four items are missing from there. >> >> When I get to work machine I can post what it looks like in my machine. >> >> Timo Pietilä >> >> On 14.10.2020 12.37, Herbie wrote: >>> Suggestion: >>> >>> Perhaps your client uses the ImageJ-menu command: >>> >>> Process >> Batch >> Convert... >>> >>> that is described in the ImageJ user-guide (subsection >>> "29.12.2 Convert…"): >>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__imagej.nih.gov_ij_docs_guide_146-2D29.html-23toc-2DSubsection-2D29.12&d=DwIDaQ&c=Nd1gv_ZWYNIRyZYZmXb18oVfc3lTqv2smA_esABG70U&r=pD-sSh_e9cMzytxHgN9Gfakl4sCheZunFOz7i3o-Ewk&m=zdqanvIPyTaCqonXBcO_-jlhlkBKAPUkeBPY6DRF5uo&s=EUgf4nj7jdM89ScI31aeE7uhVX6FaHVEzQ5AoWs5Aq8&e=> >>> >>> >>> Regards >>> >>> Herbie >>> >>> :::::::::::::::::::::::::::::::::::::::::: >>> Am 14.10.20 um 06:48 schrieb Timo Pietilä: >>>> Hello everyone. >>>> >>>> I'm not actual ImageJ user but IT support and I have a client that >>>> is trying to convert one image to another form using fiji imageJ, >>>> and process should be as easy as >>>> >>>> file - open, >>>> image - type - 8-bit, >>>> image -convert. >>>> >>>> However result is "A ImgPlus is required but none exist" >>>> >>>> According to her everything worked just about two months ago. >>>> >>>> I have hard time finding what that "convert" even should be doing, >>>> it isn't in documentation, no youtube tutorials even have it in >>>> that menu so I really don't have any clue how to debug this problem. >>>> >>>> I'm basically giving myself a real crash course of ImageJ at this >>>> point. >>>> >>>> Any ideas, clue,s anything? >>>> >>>> Timo Pietilä >>>> >>>> -- >>>> ImageJ mailing list: >>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__imagej.nih.gov_ij_list.html&d=DwIDaQ&c=Nd1gv_ZWYNIRyZYZmXb18oVfc3lTqv2smA_esABG70U&r=pD-sSh_e9cMzytxHgN9Gfakl4sCheZunFOz7i3o-Ewk&m=zdqanvIPyTaCqonXBcO_-jlhlkBKAPUkeBPY6DRF5uo&s=h0xXJqoMNz7f-UaosEmMw9m3Fp3af5DztZkx53NjVlo&e= >>> >> >> -- >> ImageJ mailing list: >> https://urldefense.proofpoint.com/v2/url?u=http-3A__imagej.nih.gov_ij_list.html&d=DwIDaQ&c=Nd1gv_ZWYNIRyZYZmXb18oVfc3lTqv2smA_esABG70U&r=pD-sSh_e9cMzytxHgN9Gfakl4sCheZunFOz7i3o-Ewk&m=zdqanvIPyTaCqonXBcO_-jlhlkBKAPUkeBPY6DRF5uo&s=h0xXJqoMNz7f-UaosEmMw9m3Fp3af5DztZkx53NjVlo&e= > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Timo Pietilä
Sorry Timo,
but I have no idea what you are speaking of. There is no ImageJ-menu named -menu. What menu items are you referring to and which of the ImageJ-menus do you mean? What does *plain* convert mean? Can I conclude that your client uses the ImageJ-GUI? Please be more precise and detailed, otherwise we won't be able to help. Regards Herbie :::::::::::::::::::::::::::::::::::::::::: Am 14.10.20 um 15:14 schrieb Timo Pietilä: > No, there is just plain convert at the four bottom items at image -menu. > That's the one she tried to use and which gives that error. I can > replicate the error in my own work machine. > > I'm at home now, so can't remember what the other three were, however > none of those are documented in documentation. > > In fact that menu is quite a bit longer than the one described in > documentation. More than four items are missing from there. > > When I get to work machine I can post what it looks like in my machine. > > Timo Pietilä > > On 14.10.2020 12.37, Herbie wrote: >> Suggestion: >> >> Perhaps your client uses the ImageJ-menu command: >> >> Process >> Batch >> Convert... >> >> that is described in the ImageJ user-guide (subsection "29.12.2 >> Convert…"): >> <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> >> >> Regards >> >> Herbie >> >> :::::::::::::::::::::::::::::::::::::::::: >> Am 14.10.20 um 06:48 schrieb Timo Pietilä: >>> Hello everyone. >>> >>> I'm not actual ImageJ user but IT support and I have a client that is >>> trying to convert one image to another form using fiji imageJ, and >>> process should be as easy as >>> >>> file - open, >>> image - type - 8-bit, >>> image -convert. >>> >>> However result is "A ImgPlus is required but none exist" >>> >>> According to her everything worked just about two months ago. >>> >>> I have hard time finding what that "convert" even should be doing, it >>> isn't in documentation, no youtube tutorials even have it in that >>> menu so I really don't have any clue how to debug this problem. >>> >>> I'm basically giving myself a real crash course of ImageJ at this point. >>> >>> Any ideas, clue,s anything? >>> >>> Timo Pietilä >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: image - convert does not do anything
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In reply to this post by Timo Pietilä
Hi,
In Fiji, that "convert" command is not part of IJ, but part of Fiji's imagej- ops0.45.5,jar If you type "convert" in the box under the menu, you can look at the source code which takes you to https://github.com/imagej/imagej-ops/blob/imagej-ops-0.45.5/src/main/java/net/ imagej/ops/commands/convert/ConvertImgPlus.java You probably have to contact the authors of that file. There is another "Convert..." under the Process>Batch menu. Perhaps your user is intending to use that one? Cheers Gabriel On Wednesday, 14 October 2020 14:14:45 BST you wrote: > No, there is just plain convert at the four bottom items at image -menu. > That's the one she tried to use and which gives that error. I can > replicate the error in my own work machine. > > I'm at home now, so can't remember what the other three were, however > none of those are documented in documentation. > > In fact that menu is quite a bit longer than the one described in > documentation. More than four items are missing from there. > > When I get to work machine I can post what it looks like in my machine. > > Timo Pietilä > > On 14.10.2020 12.37, Herbie wrote: > > Suggestion: > > > > Perhaps your client uses the ImageJ-menu command: > > > > Process >> Batch >> Convert... > > > > that is described in the ImageJ user-guide (subsection > > "29.12.2 Convert…"): > > <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> > > > > Regards > > > > Herbie > > > > Am 14.10.20 um 06:48 schrieb Timo Pietilä: > >> Hello everyone. > >> > >> I'm not actual ImageJ user but IT support and I have a client that is > >> trying to convert one image to another form using fiji imageJ, and > >> process should be as easy as > >> > >> file - open, > >> image - type - 8-bit, > >> image -convert. > >> > >> However result is "A ImgPlus is required but none exist" > >> > >> According to her everything worked just about two months ago. > >> > >> I have hard time finding what that "convert" even should be doing, it > >> isn't in documentation, no youtube tutorials even have it in that menu > >> so I really don't have any clue how to debug this problem. > >> > >> I'm basically giving myself a real crash course of ImageJ at this point. > >> > >> Any ideas, clue,s anything? > >> > >> Timo Pietilä > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Timo,
as Gabriel tells us, there is a menu item "Convert" that, however is part of Fiji, not ImageJ. Please note that opposite to the claim that Fiji is just ImageJ, this is not the case... I can't find any description of the functionality of this command, but here are the source and the coder that may be contacted for further details. <https://github.com/imagej/imagej-ops/tree/imagej-ops-0.45.5/src/main/java/net/imagej/ops/convert> Regards Herbie ::::::::::::::::::::::::::::::::::::::::::::: Am 14.10.20 um 15:40 schrieb Gabriel Landini: > Hi, > In Fiji, that "convert" command is not part of IJ, but part of Fiji's imagej- > ops0.45.5,jar > > If you type "convert" in the box under the menu, you can look at the source > code which takes you to > > https://github.com/imagej/imagej-ops/blob/imagej-ops-0.45.5/src/main/java/net/ > imagej/ops/commands/convert/ConvertImgPlus.java > > You probably have to contact the authors of that file. > > There is another "Convert..." under the Process>Batch menu. Perhaps your user > is intending to use that one? > > Cheers > > Gabriel > > > On Wednesday, 14 October 2020 14:14:45 BST you wrote: >> No, there is just plain convert at the four bottom items at image -menu. >> That's the one she tried to use and which gives that error. I can >> replicate the error in my own work machine. >> >> I'm at home now, so can't remember what the other three were, however >> none of those are documented in documentation. >> >> In fact that menu is quite a bit longer than the one described in >> documentation. More than four items are missing from there. >> >> When I get to work machine I can post what it looks like in my machine. >> >> Timo Pietilä >> >> On 14.10.2020 12.37, Herbie wrote: >>> Suggestion: >>> >>> Perhaps your client uses the ImageJ-menu command: >>> >>> Process >> Batch >> Convert... >>> >>> that is described in the ImageJ user-guide (subsection >>> "29.12.2 Convert…"): >>> <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> >>> >>> Regards >>> >>> Herbie >>> >>> Am 14.10.20 um 06:48 schrieb Timo Pietilä: >>>> Hello everyone. >>>> >>>> I'm not actual ImageJ user but IT support and I have a client that is >>>> trying to convert one image to another form using fiji imageJ, and >>>> process should be as easy as >>>> >>>> file - open, >>>> image - type - 8-bit, >>>> image -convert. >>>> >>>> However result is "A ImgPlus is required but none exist" >>>> >>>> According to her everything worked just about two months ago. >>>> >>>> I have hard time finding what that "convert" even should be doing, it >>>> isn't in documentation, no youtube tutorials even have it in that menu >>>> so I really don't have any clue how to debug this problem. >>>> >>>> I'm basically giving myself a real crash course of ImageJ at this point. >>>> >>>> Any ideas, clue,s anything? >>>> >>>> Timo Pietilä >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Re: image - convert does not do anything
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In reply to this post by Gabriel Landini
Maybe this old big report given some additional information:
https://fiji.sc/bug/1051.html On 14.10.2020 15:40, Gabriel Landini wrote: > Hi, > In Fiji, that "convert" command is not part of IJ, but part of Fiji's imagej- > ops0.45.5,jar > > If you type "convert" in the box under the menu, you can look at the source > code which takes you to > > https://github.com/imagej/imagej-ops/blob/imagej-ops-0.45.5/src/main/java/net/ > imagej/ops/commands/convert/ConvertImgPlus.java > > You probably have to contact the authors of that file. > > There is another "Convert..." under the Process>Batch menu. Perhaps your user > is intending to use that one? > > Cheers > > Gabriel > > > On Wednesday, 14 October 2020 14:14:45 BST you wrote: >> No, there is just plain convert at the four bottom items at image -menu. >> That's the one she tried to use and which gives that error. I can >> replicate the error in my own work machine. >> >> I'm at home now, so can't remember what the other three were, however >> none of those are documented in documentation. >> >> In fact that menu is quite a bit longer than the one described in >> documentation. More than four items are missing from there. >> >> When I get to work machine I can post what it looks like in my machine. >> >> Timo Pietilä >> >> On 14.10.2020 12.37, Herbie wrote: >>> Suggestion: >>> >>> Perhaps your client uses the ImageJ-menu command: >>> >>> Process >> Batch >> Convert... >>> >>> that is described in the ImageJ user-guide (subsection >>> "29.12.2 Convert…"): >>> <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> >>> >>> Regards >>> >>> Herbie >>> >>> Am 14.10.20 um 06:48 schrieb Timo Pietilä: >>>> Hello everyone. >>>> >>>> I'm not actual ImageJ user but IT support and I have a client that is >>>> trying to convert one image to another form using fiji imageJ, and >>>> process should be as easy as >>>> >>>> file - open, >>>> image - type - 8-bit, >>>> image -convert. >>>> >>>> However result is "A ImgPlus is required but none exist" >>>> >>>> According to her everything worked just about two months ago. >>>> >>>> I have hard time finding what that "convert" even should be doing, it >>>> isn't in documentation, no youtube tutorials even have it in that menu >>>> so I really don't have any clue how to debug this problem. >>>> >>>> I'm basically giving myself a real crash course of ImageJ at this point. >>>> >>>> Any ideas, clue,s anything? >>>> >>>> Timo Pietilä >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: image - convert does not do anything
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In reply to this post by Herbie
Thanks, this helps quite a lot. Now I at least have a direction where to
find additional info. Previously had no idea how to proceed further and not just bang my head to the wall. Timo Pietilä On 14.10.2020 17.00, Herbie wrote: > Timo, > > as Gabriel tells us, there is a menu item "Convert" that, however is > part of Fiji, not ImageJ. Please note that opposite to the claim that > Fiji is just ImageJ, this is not the case... > > I can't find any description of the functionality of this command, but > here are the source and the coder that may be contacted for further > details. > <https://github.com/imagej/imagej-ops/tree/imagej-ops-0.45.5/src/main/java/net/imagej/ops/convert> > > > Regards > > Herbie > > ::::::::::::::::::::::::::::::::::::::::::::: > Am 14.10.20 um 15:40 schrieb Gabriel Landini: >> Hi, >> In Fiji, that "convert" command is not part of IJ, but part of Fiji's >> imagej- >> ops0.45.5,jar >> >> If you type "convert" in the box under the menu, you can look at the >> source >> code which takes you to >> >> https://github.com/imagej/imagej-ops/blob/imagej-ops-0.45.5/src/main/java/net/ >> >> imagej/ops/commands/convert/ConvertImgPlus.java >> >> You probably have to contact the authors of that file. >> >> There is another "Convert..." under the Process>Batch menu. Perhaps >> your user >> is intending to use that one? >> >> Cheers >> >> Gabriel >> >> >> On Wednesday, 14 October 2020 14:14:45 BST you wrote: >>> No, there is just plain convert at the four bottom items at image -menu. >>> That's the one she tried to use and which gives that error. I can >>> replicate the error in my own work machine. >>> >>> I'm at home now, so can't remember what the other three were, however >>> none of those are documented in documentation. >>> >>> In fact that menu is quite a bit longer than the one described in >>> documentation. More than four items are missing from there. >>> >>> When I get to work machine I can post what it looks like in my machine. >>> >>> Timo Pietilä >>> >>> On 14.10.2020 12.37, Herbie wrote: >>>> Suggestion: >>>> >>>> Perhaps your client uses the ImageJ-menu command: >>>> >>>> Process >> Batch >> Convert... >>>> >>>> that is described in the ImageJ user-guide (subsection >>>> "29.12.2 Convert…"): >>>> <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> >>>> >>>> Regards >>>> >>>> Herbie >>>> >>>> Am 14.10.20 um 06:48 schrieb Timo Pietilä: >>>>> Hello everyone. >>>>> >>>>> I'm not actual ImageJ user but IT support and I have a client that is >>>>> trying to convert one image to another form using fiji imageJ, and >>>>> process should be as easy as >>>>> >>>>> file - open, >>>>> image - type - 8-bit, >>>>> image -convert. >>>>> >>>>> However result is "A ImgPlus is required but none exist" >>>>> >>>>> According to her everything worked just about two months ago. >>>>> >>>>> I have hard time finding what that "convert" even should be doing, it >>>>> isn't in documentation, no youtube tutorials even have it in that menu >>>>> so I really don't have any clue how to debug this problem. >>>>> >>>>> I'm basically giving myself a real crash course of ImageJ at this >>>>> point. >>>>> >>>>> Any ideas, clue,s anything? >>>>> >>>>> Timo Pietilä >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: image - convert does not do anything
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Hi all,
The "Image > Convert" command was an obsolete experimental command (one of several) included with ImageJ Ops. I removed the following such commands from the menus: * Image > Convert * Image > Convolve * Image > Threshold > Project * Image > Threshold > Apply Threshold Run Help > Update... (not Help > Update ImageJ) to get the updated imagej-ops library. Regards, Curtis -- Curtis Rueden Software architect, LOCI/Eliceiri lab - https://loci.wisc.edu/software ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden Have you tried the Image.sc Forum? https://forum.image.sc/ On Wed, Oct 14, 2020 at 9:41 AM Timo Pietilä <[hidden email]> wrote: > Thanks, this helps quite a lot. Now I at least have a direction where to > find additional info. Previously had no idea how to proceed further and > not just bang my head to the wall. > > Timo Pietilä > > On 14.10.2020 17.00, Herbie wrote: > > Timo, > > > > as Gabriel tells us, there is a menu item "Convert" that, however is > > part of Fiji, not ImageJ. Please note that opposite to the claim that > > Fiji is just ImageJ, this is not the case... > > > > I can't find any description of the functionality of this command, but > > here are the source and the coder that may be contacted for further > > details. > > < > https://github.com/imagej/imagej-ops/tree/imagej-ops-0.45.5/src/main/java/net/imagej/ops/convert> > > > > > > > Regards > > > > Herbie > > > > ::::::::::::::::::::::::::::::::::::::::::::: > > Am 14.10.20 um 15:40 schrieb Gabriel Landini: > >> Hi, > >> In Fiji, that "convert" command is not part of IJ, but part of Fiji's > >> imagej- > >> ops0.45.5,jar > >> > >> If you type "convert" in the box under the menu, you can look at the > >> source > >> code which takes you to > >> > >> > https://github.com/imagej/imagej-ops/blob/imagej-ops-0.45.5/src/main/java/net/ > >> > >> imagej/ops/commands/convert/ConvertImgPlus.java > >> > >> You probably have to contact the authors of that file. > >> > >> There is another "Convert..." under the Process>Batch menu. Perhaps > >> your user > >> is intending to use that one? > >> > >> Cheers > >> > >> Gabriel > >> > >> > >> On Wednesday, 14 October 2020 14:14:45 BST you wrote: > >>> No, there is just plain convert at the four bottom items at image > -menu. > >>> That's the one she tried to use and which gives that error. I can > >>> replicate the error in my own work machine. > >>> > >>> I'm at home now, so can't remember what the other three were, however > >>> none of those are documented in documentation. > >>> > >>> In fact that menu is quite a bit longer than the one described in > >>> documentation. More than four items are missing from there. > >>> > >>> When I get to work machine I can post what it looks like in my machine. > >>> > >>> Timo Pietilä > >>> > >>> On 14.10.2020 12.37, Herbie wrote: > >>>> Suggestion: > >>>> > >>>> Perhaps your client uses the ImageJ-menu command: > >>>> > >>>> Process >> Batch >> Convert... > >>>> > >>>> that is described in the ImageJ user-guide (subsection > >>>> "29.12.2 Convert…"): > >>>> < > https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12> > >>>> > >>>> Regards > >>>> > >>>> Herbie > >>>> > >>>> Am 14.10.20 um 06:48 schrieb Timo Pietilä: > >>>>> Hello everyone. > >>>>> > >>>>> I'm not actual ImageJ user but IT support and I have a client that is > >>>>> trying to convert one image to another form using fiji imageJ, and > >>>>> process should be as easy as > >>>>> > >>>>> file - open, > >>>>> image - type - 8-bit, > >>>>> image -convert. > >>>>> > >>>>> However result is "A ImgPlus is required but none exist" > >>>>> > >>>>> According to her everything worked just about two months ago. > >>>>> > >>>>> I have hard time finding what that "convert" even should be doing, it > >>>>> isn't in documentation, no youtube tutorials even have it in that > menu > >>>>> so I really don't have any clue how to debug this problem. > >>>>> > >>>>> I'm basically giving myself a real crash course of ImageJ at this > >>>>> point. > >>>>> > >>>>> Any ideas, clue,s anything? > >>>>> > >>>>> Timo Pietilä > >>> > >>> -- > >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > >> -- > >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > > > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: image - convert does not do anything
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Thanks, that removed the menu item.
What did it do when it still was there? My client has used it before, so I might need to tell her how to do the same without that menu item. Timo Pietilä On 15.10.2020 7.14, Curtis Rueden wrote: > Hi all, > > The "Image > Convert" command was an obsolete experimental command (one > of several) included with ImageJ Ops. I removed the following such > commands from the menus: > > * Image > Convert > * Image > Convolve > * Image > Threshold > Project > * Image > Threshold > Apply Threshold > > Run Help > Update... (not Help > Update ImageJ) to get the updated > imagej-ops library. > > Regards, > Curtis > > -- > Curtis Rueden > Software architect, LOCI/Eliceiri lab - https://loci.wisc.edu/software > <https://loci.wisc.edu/software> > ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden > <https://imagej.net/User:Rueden> > Have you tried the Image.sc Forum? https://forum.image.sc/ > <https://forum.image.sc/> > > On Wed, Oct 14, 2020 at 9:41 AM Timo Pietilä <[hidden email] > <mailto:[hidden email]>> wrote: > > Thanks, this helps quite a lot. Now I at least have a direction > where to > find additional info. Previously had no idea how to proceed further and > not just bang my head to the wall. > > Timo Pietilä > > On 14.10.2020 17.00, Herbie wrote: > > Timo, > > > > as Gabriel tells us, there is a menu item "Convert" that, however is > > part of Fiji, not ImageJ. Please note that opposite to the claim > that > > Fiji is just ImageJ, this is not the case... > > > > I can't find any description of the functionality of this > command, but > > here are the source and the coder that may be contacted for further > > details. > > > <https://github.com/imagej/imagej-ops/tree/imagej-ops-0.45.5/src/main/java/net/imagej/ops/convert > <https://github.com/imagej/imagej-ops/tree/imagej-ops-0.45.5/src/main/java/net/imagej/ops/convert>> > > > > > > > Regards > > > > Herbie > > > > ::::::::::::::::::::::::::::::::::::::::::::: > > Am 14.10.20 um 15:40 schrieb Gabriel Landini: > >> Hi, > >> In Fiji, that "convert" command is not part of IJ, but part of > Fiji's > >> imagej- > >> ops0.45.5,jar > >> > >> If you type "convert" in the box under the menu, you can look at > the > >> source > >> code which takes you to > >> > >> > https://github.com/imagej/imagej-ops/blob/imagej-ops-0.45.5/src/main/java/net/ > <https://github.com/imagej/imagej-ops/blob/imagej-ops-0.45.5/src/main/java/net/> > > >> > >> imagej/ops/commands/convert/ConvertImgPlus.java > >> > >> You probably have to contact the authors of that file. > >> > >> There is another "Convert..." under the Process>Batch menu. Perhaps > >> your user > >> is intending to use that one? > >> > >> Cheers > >> > >> Gabriel > >> > >> > >> On Wednesday, 14 October 2020 14:14:45 BST you wrote: > >>> No, there is just plain convert at the four bottom items at > image -menu. > >>> That's the one she tried to use and which gives that error. I can > >>> replicate the error in my own work machine. > >>> > >>> I'm at home now, so can't remember what the other three were, > however > >>> none of those are documented in documentation. > >>> > >>> In fact that menu is quite a bit longer than the one described in > >>> documentation. More than four items are missing from there. > >>> > >>> When I get to work machine I can post what it looks like in my > machine. > >>> > >>> Timo Pietilä > >>> > >>> On 14.10.2020 12.37, Herbie wrote: > >>>> Suggestion: > >>>> > >>>> Perhaps your client uses the ImageJ-menu command: > >>>> > >>>> Process >> Batch >> Convert... > >>>> > >>>> that is described in the ImageJ user-guide (subsection > >>>> "29.12.2 Convert…"): > >>>> > <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12 > <https://imagej.nih.gov/ij/docs/guide/146-29.html#toc-Subsection-29.12>> > >>>> > >>>> Regards > >>>> > >>>> Herbie > >>>> > >>>> Am 14.10.20 um 06:48 schrieb Timo Pietilä: > >>>>> Hello everyone. > >>>>> > >>>>> I'm not actual ImageJ user but IT support and I have a client > that is > >>>>> trying to convert one image to another form using fiji > imageJ, and > >>>>> process should be as easy as > >>>>> > >>>>> file - open, > >>>>> image - type - 8-bit, > >>>>> image -convert. > >>>>> > >>>>> However result is "A ImgPlus is required but none exist" > >>>>> > >>>>> According to her everything worked just about two months ago. > >>>>> > >>>>> I have hard time finding what that "convert" even should be > doing, it > >>>>> isn't in documentation, no youtube tutorials even have it in > that menu > >>>>> so I really don't have any clue how to debug this problem. > >>>>> > >>>>> I'm basically giving myself a real crash course of ImageJ at > this > >>>>> point. > >>>>> > >>>>> Any ideas, clue,s anything? > >>>>> > >>>>> Timo Pietilä > >>> > >>> -- > >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > <http://imagej.nih.gov/ij/list.html> > >> > >> -- > >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > <http://imagej.nih.gov/ij/list.html> > >> > > > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > <http://imagej.nih.gov/ij/list.html> > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > <http://imagej.nih.gov/ij/list.html> > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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