macro run ("make binary") doesn't work

[Chris Clarin]

Good day,

I am having trouble running my macro which has run ("Make Binary") within
it. I am getting the error that says Unrecognized command: Make Binary. I
don't know why, this is what i got from recording my commands from
Plugins->Macro->Record.

thanks! any help would be greatly appreciated.

christine
-------------------------------------------------------------------
Christine T. Clarin
UP Department of Computer Science
Work/Fax: [phone]
Mobile: [phone]
Email: [hidden email]

[Michael Schmid]

Hi Christine,

on my computer it works without problems with ImageJ 1.39s.

It is hard to imagine that a command recorded as run(String)
does not work. If there is a problem, all of these commands
should fail, e.g. run("Invert"); should also fail.

Maybe you have some hidden unprintable characters in the
command? (view the macro with a  hex editor or delete the line
and type it again).
Also note that commands are case-sensitive and also sensitive
to spaces etc.: run("make binary") and run ("Make    Binary")
won't work.

A remote possibility is a .jar file in the plugins or a corrupt
IJ_Prefs.txt file that redefines the Make Binary command.


Michael
________________________________________________________________

On 20 Feb 2008, at 05:01, Chris Clarin wrote:

> Good day,
>
> I am having trouble running my macro which has run ("Make Binary")  
> within
> it. I am getting the error that says Unrecognized command: Make  
> Binary. I
> don't know why, this is what i got from recording my commands from
> Plugins->Macro->Record.
>
> thanks! any help would be greatly appreciated.
>
> christine
> -------------------------------------------------------------------
> Christine T. Clarin
> UP Department of Computer Science
> Work/Fax: [phone]
> Mobile: [phone]
> Email: [hidden email]

[Chris Clarin]

thank you for the reply -- it still doesn't work for me =( i exchanged it
with running setAutoThreshold() and apply lut instead -- i saw it in one of
the old macros and thought it would work and so far it does.

as of now, all the others like invert, fill holes, etc. works but the remove
outliers function does not work...but all the others does... i'm using
imagej1.38. i'll try it with 1.39

thank you very much!

chris

On Wed, Feb 20, 2008 at 6:08 PM, Michael Schmid <[hidden email]>
wrote:

> Hi Christine,
>
> on my computer it works without problems with ImageJ 1.39s.
>
> It is hard to imagine that a command recorded as run(String)
> does not work. If there is a problem, all of these commands
> should fail, e.g. run("Invert"); should also fail.
>
> Maybe you have some hidden unprintable characters in the
> command? (view the macro with a  hex editor or delete the line
> and type it again).
> Also note that commands are case-sensitive and also sensitive
> to spaces etc.: run("make binary") and run ("Make    Binary")
> won't work.
>
> A remote possibility is a .jar file in the plugins or a corrupt
> IJ_Prefs.txt file that redefines the Make Binary command.
>
>
> Michael
> ________________________________________________________________
>
> On 20 Feb 2008, at 05:01, Chris Clarin wrote:
>
> > Good day,
> >
> > I am having trouble running my macro which has run ("Make Binary")
> > within
> > it. I am getting the error that says Unrecognized command: Make
> > Binary. I
> > don't know why, this is what i got from recording my commands from
> > Plugins->Macro->Record.
> >
> > thanks! any help would be greatly appreciated.
> >
> > christine
> > -------------------------------------------------------------------
> > Christine T. Clarin
> > UP Department of Computer Science
> > Work/Fax: [phone]
> > Mobile: [phone]
> > Email: [hidden email]
>

--
-------------------------------------------------------------------
Christine T. Clarin
UP Department of Computer Science
Work/Fax: [phone]
Mobile: [phone]
Email: [hidden email]

[Gabriel Landini]

On Thursday 21 February 2008 03:13:48 Chris Clarin wrote:
> thank you for the reply -- it still doesn't work for me =( i exchanged it
> with running setAutoThreshold() and apply lut instead -- i saw it in one of
> the old macros and thought it would work and so far it does.
>
> as of now, all the others like invert, fill holes, etc. works but the
> remove outliers function does not work...but all the others does... i'm
> using imagej1.38. i'll try it with 1.39

This works fine here:

run("Gel (105K)");
setThreshold(0, 114);
run("Convert to Mask");


and so does this one:

run("Gel (105K)");
setThreshold(0, 114);
run("Make Binary", "thresholded remaining");

[Chris Clarin]

Thank you very much for all your help, i have already found the solution to
my problem. It turns out that the imagej jar that i am using is corrupted as
i am using the one inside the macro-runner.zip file. I transferred a fresh
imagej jar file in a folder where my macros are and now everything's working
perfectly!

thank you very much and sorry for the false alarm.

chris

On Thu, Feb 21, 2008 at 5:38 PM, Michael Schmid <[hidden email]>
wrote:

> Hi Christine,
>
> probably you should do the update first. There was a problem
> with macros that create a new image - it was solved in 1.39 f.
> Maybe this is what causes your problems.
>
> As the "Romove Outliers" function is based on my code, I think
> Wayne would have told me about problems associated with it,
> but I don't remember any. So if you have trouble with it, let
> me know, please.
>
> Michael
> ________________________________________________________________
> Michael Schmid                    email: [hidden email]
> Institut fuer Allgemeine Physik, Technische Universitaet Wien
> Wiedner Hauptstr. 8-10/134, A 1040 Wien, Austria
> Tel. [phone] or -13453, Fax [phone]
> ________________________________________________________________
>
> On 21 Feb 2008, at 04:13, Chris Clarin wrote:
>
> > thank you for the reply -- it still doesn't work for me =( i
> > exchanged it
> > with running setAutoThreshold() and apply lut instead -- i saw it
> > in one of
> > the old macros and thought it would work and so far it does.
> >
> > as of now, all the others like invert, fill holes, etc. works but
> > the remove
> > outliers function does not work...but all the others does... i'm using
> > imagej1.38. i'll try it with 1.39
> >
> > thank you very much!
> >
> > chris
> >
> > On Wed, Feb 20, 2008 at 6:08 PM, Michael Schmid
> > <[hidden email]>
> > wrote:
> >
> >> Hi Christine,
> >>
> >> on my computer it works without problems with ImageJ 1.39s.
> >>
> >> It is hard to imagine that a command recorded as run(String)
> >> does not work. If there is a problem, all of these commands
> >> should fail, e.g. run("Invert"); should also fail.
> >>
> >> Maybe you have some hidden unprintable characters in the
> >> command? (view the macro with a  hex editor or delete the line
> >> and type it again).
> >> Also note that commands are case-sensitive and also sensitive
> >> to spaces etc.: run("make binary") and run ("Make    Binary")
> >> won't work.
> >>
> >> A remote possibility is a .jar file in the plugins or a corrupt
> >> IJ_Prefs.txt file that redefines the Make Binary command.
> >>
> >>
> >> Michael
> >> ________________________________________________________________
> >>
> >> On 20 Feb 2008, at 05:01, Chris Clarin wrote:
> >>
> >>> Good day,
> >>>
> >>> I am having trouble running my macro which has run ("Make Binary")
> >>> within
> >>> it. I am getting the error that says Unrecognized command: Make
> >>> Binary. I
> >>> don't know why, this is what i got from recording my commands from
> >>> Plugins->Macro->Record.
> >>>
> >>> thanks! any help would be greatly appreciated.
> >>>
> >>> christine
> >>> -------------------------------------------------------------------
> >>> Christine T. Clarin
> >>> UP Department of Computer Science
> >>> Work/Fax: [phone]
> >>> Mobile: [phone]
> >>> Email: [hidden email]
> >>
> >
> >
> >
> > --
> > -------------------------------------------------------------------
> > Christine T. Clarin
> > UP Department of Computer Science
> > Work/Fax: [phone]
> > Mobile: [phone]
> > Email: [hidden email]
>
>

--
-------------------------------------------------------------------
Christine T. Clarin
UP Department of Computer Science
Work/Fax: [phone]
Mobile: [phone]
Email: [hidden email]