sholl analysis - color bar

[MicheleB]

Hi All

I'm using the sholl analysis plugin in Fiji to perform a sholl analysis on my traced neurons. I managed to get nice pictures of neurons with branches color-coded according to their degree of ramification (blue few intersections, red many intersections) as clearly shown in http://fiji.sc/Sholl_Analysis. However, I couldn't find a way to get the associated color bar explaining the meaning of the colors (as in the illustrative figure in http://fiji.sc/Sholl_Analysis) .
Any suggestion on how to draw such color bar?

Thanks

Michele

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[Tiago Ferreira-2]

Hi Michele,

Use the Analyze▷Tools▷Calibration Bar... command[1] as suggested in http://fiji.sc/Sholl_Analysis#Output_Options
-tiago

[1] http://imagej.nih.gov/ij/docs/guide/146-30.html#sub:Calibration-Bar...


On 2013.10.10, at 18:08 , Michele Bellesi wrote:

> Hi All
>
> I'm using the sholl analysis plugin in Fiji to perform a sholl analysis on my traced neurons. I managed to get nice pictures of neurons with branches color-coded according to their degree of ramification (blue few intersections, red many intersections) as clearly shown in http://fiji.sc/Sholl_Analysis. However, I couldn't find a way to get the associated color bar explaining the meaning of the colors (as in the illustrative figure in http://fiji.sc/Sholl_Analysis) .
> Any suggestion on how to draw such color bar?
>
> Thanks
>
> Michele
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Best,
-tiago

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