summing columns in ROI manager
Locked
 
|
Hi,
Thanks very much to Kees, I can now measure the area of the blood vessels. The 1st column in the ROI manager results after this very successful process is the area of the blood vessels. Is it possible to some/had a that column that is headed "area". It is possible to get primary order statistics but not area. Whether it is in pixels or a measurement system does not matter as I am measuring change following an intervention. I would like to be able to click and sum that column rather than export the file into a spreadsheet. This time, I am asking early. Thank you very much for your help in anticipation Regards Simon Dr Simon Locke MBBS BMed Sci FACSP FFSEM (UK) FRACGP Sport and Exercise Physician Bendigo Orthopaedic and Sports Medicine Clinic 176 Barnard st, Bendigo, Victoria, 3550 P:613 5442 5288 F:613 5442 5399 W:sportmovementcentre.com Centre for Sport+ Movement is now on Facebook http://www.facebook.com --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
|
|
Dear Simon,
In the Results table you can right-mouse click and select 'Summarize': this will give you mean, SD, min and max for each column in the Results table. Alternatively, in Analyze > Analyze Particles you can select Summarize, what will give you a Summary table of the selected measurements under Analyze > Set Measurements. Best wishes Kees -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Simon Locke Sent: 11 December 2013 03:22 To: [hidden email] Subject: summing columns in ROI manager Hi, Thanks very much to Kees, I can now measure the area of the blood vessels. The 1st column in the ROI manager results after this very successful process is the area of the blood vessels. Is it possible to some/had a that column that is headed "area". It is possible to get primary order statistics but not area. Whether it is in pixels or a measurement system does not matter as I am measuring change following an intervention. I would like to be able to click and sum that column rather than export the file into a spreadsheet. This time, I am asking early. Thank you very much for your help in anticipation Regards Simon Dr Simon Locke MBBS BMed Sci FACSP FFSEM (UK) FRACGP Sport and Exercise Physician Bendigo Orthopaedic and Sports Medicine Clinic 176 Barnard st, Bendigo, Victoria, 3550 P:613 5442 5288 F:613 5442 5399 W:sportmovementcentre.com Centre for Sport+ Movement is now on Facebook http://www.facebook.com --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: summing columns in ROI manager
|
|
Dear Kees,
Thank you for your reply. I have done all of those but they are statistical results. I am looking to add (sum) the numbers in a column. I only need the area column. Do you have any thoughts? Thank you Regards Simon Dr Simon Locke MBBS BMed Sci FACSP FFSEM (UK) FRACGP Sport and Exercise Physician Bendigo Orthopaedic and Sports Medicine Clinic 176 Barnard st, Bendigo, Victoria, 3550 P:613 5442 5288 F:613 5442 5399 W:sportmovementcentre.com Centre for Sport+ Movement is now on Facebook http://www.facebook.com -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Straatman, Kees (Dr.) Sent: Wednesday, 11 December 2013 6:53 PM To: [hidden email] Subject: Re: summing columns in ROI manager Dear Simon, In the Results table you can right-mouse click and select 'Summarize': this will give you mean, SD, min and max for each column in the Results table. Alternatively, in Analyze > Analyze Particles you can select Summarize, what will give you a Summary table of the selected measurements under Analyze > Set Measurements. Best wishes Kees -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Simon Locke Sent: 11 December 2013 03:22 To: [hidden email] Subject: summing columns in ROI manager Hi, Thanks very much to Kees, I can now measure the area of the blood vessels. The 1st column in the ROI manager results after this very successful process is the area of the blood vessels. Is it possible to some/had a that column that is headed "area". It is possible to get primary order statistics but not area. Whether it is in pixels or a measurement system does not matter as I am measuring change following an intervention. I would like to be able to click and sum that column rather than export the file into a spreadsheet. This time, I am asking early. Thank you very much for your help in anticipation Regards Simon Dr Simon Locke MBBS BMed Sci FACSP FFSEM (UK) FRACGP Sport and Exercise Physician Bendigo Orthopaedic and Sports Medicine Clinic 176 Barnard st, Bendigo, Victoria, 3550 P:613 5442 5288 F:613 5442 5399 W:sportmovementcentre.com Centre for Sport+ Movement is now on Facebook http://www.facebook.com --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
|
|
Dear Simon,
OK, the code below will sum the data in the first column and print it in a log file. If this is not the column you want to sum you just can change the number in 'a = values[1];' to the correct column number. Sum = 0; selectWindow("Results"); lines1 = split(getInfo(), "\n"); headings = split(lines1[0], "\t"); for (j=1; j<lines1.length; j++) { values = split(lines1[j], "\t"); a = values[1]; sum = sum + a; } print (sum); You can add additional information to the 'print (sum);' line, for example the title of the image analysed. Hope this works Best wishes Kees -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Simon Locke Sent: 13 December 2013 04:12 To: [hidden email] Subject: Re: summing columns in ROI manager Dear Kees, Thank you for your reply. I have done all of those but they are statistical results. I am looking to add (sum) the numbers in a column. I only need the area column. Do you have any thoughts? Thank you Regards Simon Dr Simon Locke MBBS BMed Sci FACSP FFSEM (UK) FRACGP Sport and Exercise Physician Bendigo Orthopaedic and Sports Medicine Clinic 176 Barnard st, Bendigo, Victoria, 3550 P:613 5442 5288 F:613 5442 5399 W:sportmovementcentre.com Centre for Sport+ Movement is now on Facebook http://www.facebook.com -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Straatman, Kees (Dr.) Sent: Wednesday, 11 December 2013 6:53 PM To: [hidden email] Subject: Re: summing columns in ROI manager Dear Simon, In the Results table you can right-mouse click and select 'Summarize': this will give you mean, SD, min and max for each column in the Results table. Alternatively, in Analyze > Analyze Particles you can select Summarize, what will give you a Summary table of the selected measurements under Analyze > Set Measurements. Best wishes Kees -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Simon Locke Sent: 11 December 2013 03:22 To: [hidden email] Subject: summing columns in ROI manager Hi, Thanks very much to Kees, I can now measure the area of the blood vessels. The 1st column in the ROI manager results after this very successful process is the area of the blood vessels. Is it possible to some/had a that column that is headed "area". It is possible to get primary order statistics but not area. Whether it is in pixels or a measurement system does not matter as I am measuring change following an intervention. I would like to be able to click and sum that column rather than export the file into a spreadsheet. This time, I am asking early. Thank you very much for your help in anticipation Regards Simon Dr Simon Locke MBBS BMed Sci FACSP FFSEM (UK) FRACGP Sport and Exercise Physician Bendigo Orthopaedic and Sports Medicine Clinic 176 Barnard st, Bendigo, Victoria, 3550 P:613 5442 5288 F:613 5442 5399 W:sportmovementcentre.com Centre for Sport+ Movement is now on Facebook http://www.facebook.com --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
«
Return to ImageJ
|
1 view|%1 views
| Free forum by Nabble | Edit this page |