tilted views of 4d data

[Jeff Hardin]

Hi Dave,

I wrote a macro that takes 4d data as TIFF stacks (or AVIs) and  
generates batch rotations as single TIFF images that can be compiled  
into a movie. See the "Batch project" macro at:

http://worms.zoology.wisc.edu/research/4d/4d.html

The macro uses "batch" mode to generate the dataset. I don't have one  
that handles multiwavelength (5D) data, however.

Cheers,

Jeff
----------------------------------------------
Jeff Hardin
Professor, Department of Zoology
Director, Biology Core Curriculum
University of Wisconsin
1117 W. Johnson St.
Madison, WI 53706
voice: [phone]
fax: [phone]
email: [hidden email]


On Nov 26, 2007, at 11:00 PM, IMAGEJ automatic digest system wrote:

> Date:    Mon, 26 Nov 2007 17:33:05 -0500
> From:    David Knecht <[hidden email]>
> Subject: 4D 5D data rendering
>
> Do we have any way yet in ImageJ to generate a tilted projection from
> a 3D over time (4D) data set (other than manually making a projection
> from each time point and then splicing them into a stack)?  Dave

[vbindokas]

You are welcome to try the 4/5D macros we have on our website:
http://digital.bsd.uchicago.edu/imagejmacros.html

Inputs should be constructed as described in macro remarks. Most require
RGB input stacks and the macro should be modified to run on the correct
number of Z slices per volume for your data (or code modified to ask for
the value each time).

regards.


Jeff Hardin wrote:

> Hi Dave,
>
> I wrote a macro that takes 4d data as TIFF stacks (or AVIs) and
> generates batch rotations as single TIFF images that can be compiled
> into a movie. See the "Batch project" macro at:
>
> http://worms.zoology.wisc.edu/research/4d/4d.html
>
> The macro uses "batch" mode to generate the dataset. I don't have one
> that handles multiwavelength (5D) data, however.
>
> Cheers,
>
> Jeff
> ----------------------------------------------
> Jeff Hardin
> Professor, Department of Zoology
> Director, Biology Core Curriculum
> University of Wisconsin
> 1117 W. Johnson St.
> Madison, WI 53706
> voice: [phone]
> fax: [phone]
> email: [hidden email]
>
>
> On Nov 26, 2007, at 11:00 PM, IMAGEJ automatic digest system wrote:
>
>> Date:    Mon, 26 Nov 2007 17:33:05 -0500
>> From:    David Knecht <[hidden email]>
>> Subject: 4D 5D data rendering
>>
>> Do we have any way yet in ImageJ to generate a tilted projection from
>> a 3D over time (4D) data set (other than manually making a projection
>> from each time point and then splicing them into a stack)?  Dave

--
__

Vytas Bindokas, Ph.D.
Research Assoc. / Assoc. Prof.,
Director, BSD Light Microscopy Core Facility
Dept Neurobiol Pharmacol Physiol MC0926
947 E 58th Street
The University of Chicago
Chicago IL 60637
Room Abbott 120
773-702-4875

email [hidden email]
 web site for LMCF:
http://digital.bsd.uchicago.edu/index.html 



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