using ImageJ as image viewer from inside R

[Christian Tischer]

Hey,

i'd basically like to use ImageJ as an ImageViewer from within R.

i am wondering how to do this best.

i guess i could

1) use rJava to directly access IJ classes or
2) send a system command such as "fiji.exe openImage.py myImage.tif", where
myImage.tif would be an input parameter to the jython script, or
3) ???

in any case i don't know how i can ensure that the currently opened
instance of IJ is used for showing the images?
i don't want for each image a new ImageJ to open as this would be rather
slow an annoying.

any suggestions?

thanks!
Tischi

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[BenTupper]

Hi,

On Oct 27, 2012, at 1:42 PM, Christian Tischer wrote:

> Hey,
>
> i'd basically like to use ImageJ as an ImageViewer from within R.
>
> i am wondering how to do this best.
>
> i guess i could
>
> 1) use rJava to directly access IJ classes or
> 2) send a system command such as "fiji.exe openImage.py myImage.tif", where
> myImage.tif would be an input parameter to the jython script, or
> 3) ???
>
> in any case i don't know how i can ensure that the currently opened
> instance of IJ is used for showing the images?
> i don't want for each image a new ImageJ to open as this would be rather
> slow an annoying.
>
> any suggestions?

Have you explored these?

http://www.r-bloggers.com/image-data-from-imagej-to-r-and-vice-versa/

http://sourceforge.net/projects/bio7

http://romainfrancois.blog.free.fr/index.php?post/2009/06/22/using-ImageJ-from-R%3A-the-RImageJ-package

Cheers,
Ben
--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Antoinette]

Recently, I have found many available resource on image web viewer or html5 image viewer in another name. We can view image and document file, such as pdf, tiff, word as well as excel on this web viewer in some modern broswer, like firefox, google chrome or safari.