z code plugin in xyzt series

[Maria Calvo]

Dear all,
We have 4D series xyzt (pe: 5z) .We would like to make z projection (in
each timepoint) preserving z information with z code plugin (that gives
different color to each z position ). We only manage to do z code in one
timepoint. How can it be done in the whole time serie? We would like to
do then z project (maximum projection) to preserve z information along time.
Thank you in advance,
Maria Calvo

--


___________________________________

Maria Calvo, PhD

Unitat de Microscòpia Confocal
Serveis Cientificotècnics-C.Casanova
Facultat de Medicina-UB
Casanova 143
Barcelona 08036

Tel: [phone]/39930
Fax: [phone]
E-mail: [hidden email]
___________________________________

[Ruy]

I believe Image 5D does this.

Ruy Jaeger

On 11/3/08 12:40 PM, "Maria Calvo" <[hidden email]> wrote:

> Dear all,
> We have 4D series xyzt (pe: 5z) .We would like to make z projection (in
> each timepoint) preserving z information with z code plugin (that gives
> different color to each z position ). We only manage to do z code in one
> timepoint. How can it be done in the whole time serie? We would like to
> do then z project (maximum projection) to preserve z information along time.
> Thank you in advance,
> Maria Calvo


 ========================================================================
                   Dr. Ruy G. Jaeger, DDS, MSD, PhD
                                Professor
 University of Sao Paulo            Institute of Biomedical Sciences
             Department of Cell and Developmental Biology
                     Av. Prof. Lineu Prestes 1524 
      Rooms 302 (Office and microscopy room) and 405 (Laboratory)   
                         Sao Paulo SP 05508-900
 Phones: 55-11-30918454 (office), 30918034 (Lab)    FAX [phone]
                                BRAZIL
          website: http://www.icb.usp.br/~rgjaeger/index.html
 ========================================================================

[Tony Collins-4]

HI Mario,

This works for one timepoint. http://www.macbiophotonics.ca/imagej/z.htm#z_code
You should be able to adapt it or use it in a macro.

The plugin is bundled in MBF ImageJ from here:
http://www.macbiophotonics.ca/downloads.htm

Let me know if you have trouble accessing it. Our website has been a bit flakey lately - and I can never tell from where I am "inside".

Regards,
Tony



Tony J. Collins, Ph.D.
McMaster Biophotonics Facility
Dept. Biochemistry and Biomedical Sciences HSC 4H21A McMaster
University, Hamilton, ON, L8N 3Z5
[phone] x28812(off.)/x26488(lab)
[hidden email]     www.macbiophotonics.ca

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Maria Calvo
> Sent: March 11, 2008 11:40 AM
> To: [hidden email]
> Subject: z code plugin in xyzt series
>
> Dear all,
> We have 4D series xyzt (pe: 5z) .We would like to make z projection (in
> each timepoint) preserving z information with z code plugin (that gives
> different color to each z position ). We only manage to do z code in
> one
> timepoint. How can it be done in the whole time serie? We would like to
> do then z project (maximum projection) to preserve z information along
> time.
> Thank you in advance,
> Maria Calvo
>
> --
>
>
> ___________________________________
>
> Maria Calvo, PhD
>
> Unitat de Microscòpia Confocal
> Serveis Cientificotècnics-C.Casanova
> Facultat de Medicina-UB
> Casanova 143
> Barcelona 08036
>
> Tel: [phone]/39930
> Fax: [phone]
> E-mail: [hidden email]
> ___________________________________