Alternatives to ImageJ
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Hi all,
I am currently using ImageJ to assist with my research in behavioral ecotoxicology. I was curious as to whether someone could suggest an alternative to ImageJ that can process longer videos (10-15 minutes), and also videos that are in MP4 format. Any advice would be much appreciated. Thanks ! -Sarah -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Good day Sarah,
it would help to know what makes you ask for an alternative to ImageJ on the ImageJ-list. Using virtual stack should allow you to process long videos, however not videos in MP4-format. There are however various free applications available for all common platforms that transcode MP4 to avi or another video format that is accepted by ImageJ with or without BioFormats-Importer. Best Herbie ::::::::::::::::::::::::::::::::::::::::::::::::: Am 28.06.16 um 20:58 schrieb Sarah Heissenberger: > Hi all, > > > I am currently using ImageJ to assist with my research in behavioral > ecotoxicology. > > I was curious as to whether someone could suggest an alternative to > ImageJ that can process longer videos (10-15 minutes), and also > videos that are in MP4 format. > > > Any advice would be much appreciated. > > > Thanks ! > > -Sarah > > > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Sarah Heissenberger
In Fiji, via the update sites you can install a plugin that uses the FFMPEG
library to read in e.g. your MP4 movies. Can also write such movies. Best, Albert 2016-06-28 14:58 GMT-04:00 Sarah Heissenberger <[hidden email]>: > Hi all, > > > I am currently using ImageJ to assist with my research in behavioral > ecotoxicology. > > I was curious as to whether someone could suggest an alternative to ImageJ > that can process longer videos (10-15 minutes), and also videos that are in > MP4 format. > > > Any advice would be much appreciated. > > > Thanks ! > > -Sarah > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- http://albert.rierol.net http://www.janelia.org/lab/cardona-lab http://www.ini.uzh.ch/~acardona/ -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Albert,
I see that the FFMPEG plugin is installed in my version of Fiji but I cannot figure out how to open the MP4 files. Neither File>Open or File>Import seem to lead to success. Dan -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Albert Cardona Sent: Wednesday, June 29, 2016 12:57 AM To: [hidden email] Subject: Re: Alternatives to ImageJ In Fiji, via the update sites you can install a plugin that uses the FFMPEG library to read in e.g. your MP4 movies. Can also write such movies. Best, Albert 2016-06-28 14:58 GMT-04:00 Sarah Heissenberger <[hidden email]>: > Hi all, > > > I am currently using ImageJ to assist with my research in behavioral > ecotoxicology. > > I was curious as to whether someone could suggest an alternative to > ImageJ that can process longer videos (10-15 minutes), and also videos > that are in > MP4 format. > > > Any advice would be much appreciated. > > > Thanks ! > > -Sarah > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- http://albert.rierol.net http://www.janelia.org/lab/cardona-lab http://www.ini.uzh.ch/~acardona/ -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Dan,
Try: * File > Import > Movie (FFMPEG)... * File > Save As > Movie (FFMPEG)... You can also find these easily using the Command Finder: http://imagej.net/Command_Finder Regards, Curtis -- Curtis Rueden LOCI software architect - http://loci.wisc.edu/software ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden Did you know ImageJ has a forum? http://forum.imagej.net/ On Wed, Jun 29, 2016 at 7:36 AM, Dan McDonald < [hidden email]> wrote: > Albert, > I see that the FFMPEG plugin is installed in my version of Fiji but I > cannot figure out how to open the MP4 files. Neither File>Open or > File>Import seem to lead to success. > Dan > > -----Original Message----- > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of > Albert Cardona > Sent: Wednesday, June 29, 2016 12:57 AM > To: [hidden email] > Subject: Re: Alternatives to ImageJ > > In Fiji, via the update sites you can install a plugin that uses the > FFMPEG library to read in e.g. your MP4 movies. Can also write such movies. > > Best, > > Albert > > 2016-06-28 14:58 GMT-04:00 Sarah Heissenberger <[hidden email] > >: > > > Hi all, > > > > > > I am currently using ImageJ to assist with my research in behavioral > > ecotoxicology. > > > > I was curious as to whether someone could suggest an alternative to > > ImageJ that can process longer videos (10-15 minutes), and also videos > > that are in > > MP4 format. > > > > > > Any advice would be much appreciated. > > > > > > Thanks ! > > > > -Sarah > > > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > > > -- > http://albert.rierol.net > http://www.janelia.org/lab/cardona-lab > http://www.ini.uzh.ch/~acardona/ > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Thanks Curtis.
There must be a step I'm missing. I do not have the File>Import>Movie option and it doesn't show up in Command Finder. Two ffmpeg jars are listed as present and up to date in the ImageJ Updater: jars/ffmpeg.jar and jars/linux64/ffmpeg-linux-x86_64.jar Perhaps I need another jar or download? I am running under Linux. ImageJ 2.0.0-rc49/1.51d;java 1.8.0_66[64-bit] Dan -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Curtis Rueden Sent: Wednesday, June 29, 2016 9:41 AM To: [hidden email] Subject: Re: Alternatives to ImageJ Hi Dan, Try: * File > Import > Movie (FFMPEG)... * File > Save As > Movie (FFMPEG)... You can also find these easily using the Command Finder: http://imagej.net/Command_Finder Regards, Curtis -- Curtis Rueden LOCI software architect - http://loci.wisc.edu/software ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden Did you know ImageJ has a forum? http://forum.imagej.net/ On Wed, Jun 29, 2016 at 7:36 AM, Dan McDonald < [hidden email]> wrote: > Albert, > I see that the FFMPEG plugin is installed in my version of Fiji but I > cannot figure out how to open the MP4 files. Neither File>Open or > File>Import seem to lead to success. > Dan > > -----Original Message----- > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of > Albert Cardona > Sent: Wednesday, June 29, 2016 12:57 AM > To: [hidden email] > Subject: Re: Alternatives to ImageJ > > In Fiji, via the update sites you can install a plugin that uses the > FFMPEG library to read in e.g. your MP4 movies. Can also write such movies. > > Best, > > Albert > > 2016-06-28 14:58 GMT-04:00 Sarah Heissenberger > <[hidden email] > >: > > > Hi all, > > > > > > I am currently using ImageJ to assist with my research in behavioral > > ecotoxicology. > > > > I was curious as to whether someone could suggest an alternative to > > ImageJ that can process longer videos (10-15 minutes), and also > > videos that are in > > MP4 format. > > > > > > Any advice would be much appreciated. > > > > > > Thanks ! > > > > -Sarah > > > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > > > -- > http://albert.rierol.net > http://www.janelia.org/lab/cardona-lab > http://www.ini.uzh.ch/~acardona/ > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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The update site has all the needed files; you should not need to download
anything else. The file with the movie plugins is plugins/FFMPEG_IO.jar. In the ImageJ Updater's advanced mode, you can change the View Options to "View files of the 'FFMPEG' site". Make sure that you have plugins/FFMPEG_IO.jar as "Up-to-date" as well as the native library for your platform in the lib folder. -- Curtis Rueden LOCI software architect - http://loci.wisc.edu/software ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden Did you know ImageJ has a forum? http://forum.imagej.net/ On Wed, Jun 29, 2016 at 9:12 AM, Dan McDonald < [hidden email]> wrote: > Thanks Curtis. > > There must be a step I'm missing. I do not have the File>Import>Movie > option and it doesn't show up in Command Finder. > > Two ffmpeg jars are listed as present and up to date in the ImageJ > Updater: jars/ffmpeg.jar and jars/linux64/ffmpeg-linux-x86_64.jar > > Perhaps I need another jar or download? > > I am running under Linux. ImageJ 2.0.0-rc49/1.51d;java 1.8.0_66[64-bit] > > Dan > > -----Original Message----- > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of > Curtis Rueden > Sent: Wednesday, June 29, 2016 9:41 AM > To: [hidden email] > Subject: Re: Alternatives to ImageJ > > Hi Dan, > > Try: > * File > Import > Movie (FFMPEG)... > * File > Save As > Movie (FFMPEG)... > > You can also find these easily using the Command Finder: > http://imagej.net/Command_Finder > > Regards, > Curtis > > -- > Curtis Rueden > LOCI software architect - http://loci.wisc.edu/software > ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden Did you > know ImageJ has a forum? http://forum.imagej.net/ > > > On Wed, Jun 29, 2016 at 7:36 AM, Dan McDonald < > [hidden email]> wrote: > > > Albert, > > I see that the FFMPEG plugin is installed in my version of Fiji but I > > cannot figure out how to open the MP4 files. Neither File>Open or > > File>Import seem to lead to success. > > Dan > > > > -----Original Message----- > > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of > > Albert Cardona > > Sent: Wednesday, June 29, 2016 12:57 AM > > To: [hidden email] > > Subject: Re: Alternatives to ImageJ > > > > In Fiji, via the update sites you can install a plugin that uses the > > FFMPEG library to read in e.g. your MP4 movies. Can also write such > movies. > > > > Best, > > > > Albert > > > > 2016-06-28 14:58 GMT-04:00 Sarah Heissenberger > > <[hidden email] > > >: > > > > > Hi all, > > > > > > > > > I am currently using ImageJ to assist with my research in behavioral > > > ecotoxicology. > > > > > > I was curious as to whether someone could suggest an alternative to > > > ImageJ that can process longer videos (10-15 minutes), and also > > > videos that are in > > > MP4 format. > > > > > > > > > Any advice would be much appreciated. > > > > > > > > > Thanks ! > > > > > > -Sarah > > > > > > > > > -- > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > > > > > > > > -- > > http://albert.rierol.net > > http://www.janelia.org/lab/cardona-lab > > http://www.ini.uzh.ch/~acardona/ > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Dan McDonald
> There must be a step I'm missing. I do not have the File>Import>Movie option and it doesn't show up in Command Finder.
Dear Dan, Ensure your ImageJ is subscribed to the FFMPEG update site[1]: When I do it with Ubuntu 16.04 on a freshly downloaded Fiji installation, the following files are downloaded: * /plugins/FFMPEG_IO.jar * /lib/linux64/libffmpeg.so The commands (implemented through FFMPEG_IO.jar) become available upon restart: * File > Import > Movie (FFMPEG)... * File > Save As > Movie (FFMPEG).. Perhaps the files you mention (jars/ffmpeg.jar and jars/linux64/ffmpeg-linux-x86_64.jar) are from a different update site, or you have installed them manually? In either case, the Updater should be able to help you[2] [1] http://imagej.net/How_to_follow_a_3rd_party_update_site [2] http://imagej.net/Updater -tiago -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Thank you Tiago and Curtis.
Yes, my missing step was to explicitly subscribe to the FFMPEG update site. I am now up and running! Dan -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Tiago Ferreira Sent: Wednesday, June 29, 2016 10:43 AM To: [hidden email] Subject: Re: Alternatives to ImageJ > There must be a step I'm missing. I do not have the File>Import>Movie option and it doesn't show up in Command Finder. Dear Dan, Ensure your ImageJ is subscribed to the FFMPEG update site[1]: When I do it with Ubuntu 16.04 on a freshly downloaded Fiji installation, the following files are downloaded: * /plugins/FFMPEG_IO.jar * /lib/linux64/libffmpeg.so The commands (implemented through FFMPEG_IO.jar) become available upon restart: * File > Import > Movie (FFMPEG)... * File > Save As > Movie (FFMPEG).. Perhaps the files you mention (jars/ffmpeg.jar and jars/linux64/ffmpeg-linux-x86_64.jar) are from a different update site, or you have installed them manually? In either case, the Updater should be able to help you[2] [1] http://imagej.net/How_to_follow_a_3rd_party_update_site [2] http://imagej.net/Updater -tiago -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Dear experts,
one of the nice features of ImageJ is that you can increase its capabilities by putting the corresponding IJ-PlugIns to the IJ plugins-folder and to remove them if they are no longer needed. Moving the downloaded files "FFMPEG_IO.jar" and "libffmpeg.dylib" (for OSX) to the IJ plugins-folder won't do the trick because the latter is a library and it would really be helpful to get some advice of how and where to install it. Well understood, Fiji uses the Updater function for this purpose but what about ImageJ? Are ImageJ-users left alone? Clueless Herbie :::::::::::::::::::::::::::::::::::::::::: Am 29.06.16 um 17:39 schrieb Dan McDonald: > Thank you Tiago and Curtis. > > Yes, my missing step was to explicitly subscribe to the FFMPEG update site. > > I am now up and running! > > Dan > > -----Original Message----- > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Tiago > Ferreira > Sent: Wednesday, June 29, 2016 10:43 AM > To: [hidden email] > Subject: Re: Alternatives to ImageJ > >> There must be a step I'm missing. I do not have the File>Import>Movie > option and it doesn't show up in Command Finder. > > > Dear Dan, > > Ensure your ImageJ is subscribed to the FFMPEG update site[1]: > When I do it with Ubuntu 16.04 on a freshly downloaded Fiji installation, > the following files are downloaded: > * /plugins/FFMPEG_IO.jar > * /lib/linux64/libffmpeg.so > > The commands (implemented through FFMPEG_IO.jar) become available upon > restart: > * File > Import > Movie (FFMPEG)... > * File > Save As > Movie (FFMPEG).. > > > Perhaps the files you mention (jars/ffmpeg.jar and > jars/linux64/ffmpeg-linux-x86_64.jar) are from a different update site, or > you have installed them manually? In either case, the Updater should be able > to help you[2] > > [1] http://imagej.net/How_to_follow_a_3rd_party_update_site > [2] http://imagej.net/Updater > > -tiago > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Herbie,
> Well understood, Fiji uses the Updater function for this purpose but > what about ImageJ? Yes, the updater is part of the ImageJ2 project, upon which Fiji is built. > Are ImageJ-users left alone? ImageJ 1.x does not use the ImageJ Launcher component, which sets the java.library.path as appropriate to handle platform-dependent libraries. So in cases like this, using plain ImageJ 1.x is not the easiest path. Regards, Curtis -- Curtis Rueden LOCI software architect - http://loci.wisc.edu/software ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden Did you know ImageJ has a forum? http://forum.imagej.net/ On Wed, Jun 29, 2016 at 12:12 PM, Herbie <[hidden email]> wrote: > Dear experts, > > one of the nice features of ImageJ is that you can increase its > capabilities by putting the corresponding IJ-PlugIns to the IJ > plugins-folder and to remove them if they are no longer needed. > > Moving the downloaded files "FFMPEG_IO.jar" and "libffmpeg.dylib" (for > OSX) to the IJ plugins-folder won't do the trick because the latter is a > library and it would really be helpful to get some advice of how and where > to install it. > > Well understood, Fiji uses the Updater function for this purpose but what > about ImageJ? > > Are ImageJ-users left alone? > > Clueless > > Herbie > > :::::::::::::::::::::::::::::::::::::::::: > Am 29.06.16 um 17:39 schrieb Dan McDonald: > > Thank you Tiago and Curtis. >> >> Yes, my missing step was to explicitly subscribe to the FFMPEG update >> site. >> >> I am now up and running! >> >> Dan >> >> -----Original Message----- >> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of >> Tiago >> Ferreira >> Sent: Wednesday, June 29, 2016 10:43 AM >> To: [hidden email] >> Subject: Re: Alternatives to ImageJ >> >> There must be a step I'm missing. I do not have the File>Import>Movie >>> >> option and it doesn't show up in Command Finder. >> >> >> Dear Dan, >> >> Ensure your ImageJ is subscribed to the FFMPEG update site[1]: >> When I do it with Ubuntu 16.04 on a freshly downloaded Fiji installation, >> the following files are downloaded: >> * /plugins/FFMPEG_IO.jar >> * /lib/linux64/libffmpeg.so >> >> The commands (implemented through FFMPEG_IO.jar) become available upon >> restart: >> * File > Import > Movie (FFMPEG)... >> * File > Save As > Movie (FFMPEG).. >> >> >> Perhaps the files you mention (jars/ffmpeg.jar and >> jars/linux64/ffmpeg-linux-x86_64.jar) are from a different update site, or >> you have installed them manually? In either case, the Updater should be >> able >> to help you[2] >> >> [1] http://imagej.net/How_to_follow_a_3rd_party_update_site >> [2] http://imagej.net/Updater >> >> -tiago >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> >> > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Dear Curtis!
"ImageJ 1.x does not use the ImageJ Launcher component, which sets the java.library.path as appropriate to handle platform-dependent libraries. So in cases like this, using plain ImageJ 1.x is not the easiest path." Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ 1.x? Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a Mac? Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. Maybe a solution using FFMPEG as a compiled command line tool instead of platform-specific libraries would be a better solution but there may be reasons to not follow this straightforward approach. Best Herbie ::::::::::::::::::::::::::::::::::::::::::: Am 29.06.16 um 19:25 schrieb Curtis Rueden: > Hi Herbie, > >> Well understood, Fiji uses the Updater function for this purpose but >> what about ImageJ? > > Yes, the updater is part of the ImageJ2 project, upon which Fiji is built. > >> Are ImageJ-users left alone? > > ImageJ 1.x does not use the ImageJ Launcher component, which sets the > java.library.path as appropriate to handle platform-dependent libraries. So > in cases like this, using plain ImageJ 1.x is not the easiest path. > > Regards, > Curtis > > -- > Curtis Rueden > LOCI software architect - http://loci.wisc.edu/software > ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden > Did you know ImageJ has a forum? http://forum.imagej.net/ > > > On Wed, Jun 29, 2016 at 12:12 PM, Herbie <[hidden email]> wrote: > >> Dear experts, >> >> one of the nice features of ImageJ is that you can increase its >> capabilities by putting the corresponding IJ-PlugIns to the IJ >> plugins-folder and to remove them if they are no longer needed. >> >> Moving the downloaded files "FFMPEG_IO.jar" and "libffmpeg.dylib" (for >> OSX) to the IJ plugins-folder won't do the trick because the latter is a >> library and it would really be helpful to get some advice of how and where >> to install it. >> >> Well understood, Fiji uses the Updater function for this purpose but what >> about ImageJ? >> >> Are ImageJ-users left alone? >> >> Clueless >> >> Herbie >> >> :::::::::::::::::::::::::::::::::::::::::: >> Am 29.06.16 um 17:39 schrieb Dan McDonald: >> >> Thank you Tiago and Curtis. >>> >>> Yes, my missing step was to explicitly subscribe to the FFMPEG update >>> site. >>> >>> I am now up and running! >>> >>> Dan >>> >>> -----Original Message----- >>> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of >>> Tiago >>> Ferreira >>> Sent: Wednesday, June 29, 2016 10:43 AM >>> To: [hidden email] >>> Subject: Re: Alternatives to ImageJ >>> >>> There must be a step I'm missing. I do not have the File>Import>Movie >>>> >>> option and it doesn't show up in Command Finder. >>> >>> >>> Dear Dan, >>> >>> Ensure your ImageJ is subscribed to the FFMPEG update site[1]: >>> When I do it with Ubuntu 16.04 on a freshly downloaded Fiji installation, >>> the following files are downloaded: >>> * /plugins/FFMPEG_IO.jar >>> * /lib/linux64/libffmpeg.so >>> >>> The commands (implemented through FFMPEG_IO.jar) become available upon >>> restart: >>> * File > Import > Movie (FFMPEG)... >>> * File > Save As > Movie (FFMPEG).. >>> >>> >>> Perhaps the files you mention (jars/ffmpeg.jar and >>> jars/linux64/ffmpeg-linux-x86_64.jar) are from a different update site, or >>> you have installed them manually? In either case, the Updater should be >>> able >>> to help you[2] >>> >>> [1] http://imagej.net/How_to_follow_a_3rd_party_update_site >>> [2] http://imagej.net/Updater >>> >>> -tiago >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>> >>> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Dear Herbie,
> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ 1.x? > > Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a Mac? > > Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. You may have to play with environment variables and/or use otool and install_name_tool so that the libraries are found: http://www.chilkatforum.com/questions/4235/how-to-distribute-a-dylib- with-a-mac-os-x-application http://superuser.com/questions/282450/where-do-i-set-dyld-library-path-on-mac-os-x-and-is-it-a-good-idea https://developer.apple.com/library/mac/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/UsingDynamicLibraries.html > Maybe a solution using FFMPEG as a compiled command line tool instead of > platform-specific libraries would be a better solution but there may be > reasons to not follow this straightforward approach. I'm just being curious: what are your reasons not to follow the other straightforward approach of using Fiji (which, I am sure you know, Is Just ImageJ, and which strives at being compatible with imagej 1) ? good luck, Adrian -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Herbie
Hi Herbie,
> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ 1.x? Unlikely "impossible", but I do not know how difficult it would be, and I do not have time to experiment right now. Wayne probably has a better idea. > Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a Mac? Check the java.library.path system property. Regards, Curtis -- Curtis Rueden LOCI software architect - http://loci.wisc.edu/software ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden Did you know ImageJ has a forum? http://forum.imagej.net/ On Wed, Jun 29, 2016 at 12:47 PM, Herbie <[hidden email]> wrote: > Dear Curtis! > > > "ImageJ 1.x does not use the ImageJ Launcher component, which sets the > java.library.path as appropriate to handle platform-dependent libraries. > So in cases like this, using plain ImageJ 1.x is not the easiest path." > > > Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ 1.x? > > Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a Mac? > > Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. > > Maybe a solution using FFMPEG as a compiled command line tool instead of > platform-specific libraries would be a better solution but there may be > reasons to not follow this straightforward approach. > > Best > > Herbie > > ::::::::::::::::::::::::::::::::::::::::::: > > Am 29.06.16 um 19:25 schrieb Curtis Rueden: > > Hi Herbie, >> >> Well understood, Fiji uses the Updater function for this purpose but >>> what about ImageJ? >>> >> >> Yes, the updater is part of the ImageJ2 project, upon which Fiji is built. >> >> Are ImageJ-users left alone? >>> >> >> ImageJ 1.x does not use the ImageJ Launcher component, which sets the >> java.library.path as appropriate to handle platform-dependent libraries. >> So >> in cases like this, using plain ImageJ 1.x is not the easiest path. >> >> Regards, >> Curtis >> >> -- >> Curtis Rueden >> LOCI software architect - http://loci.wisc.edu/software >> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden >> Did you know ImageJ has a forum? http://forum.imagej.net/ >> >> >> On Wed, Jun 29, 2016 at 12:12 PM, Herbie <[hidden email]> wrote: >> >> Dear experts, >>> >>> one of the nice features of ImageJ is that you can increase its >>> capabilities by putting the corresponding IJ-PlugIns to the IJ >>> plugins-folder and to remove them if they are no longer needed. >>> >>> Moving the downloaded files "FFMPEG_IO.jar" and "libffmpeg.dylib" (for >>> OSX) to the IJ plugins-folder won't do the trick because the latter is a >>> library and it would really be helpful to get some advice of how and >>> where >>> to install it. >>> >>> Well understood, Fiji uses the Updater function for this purpose but what >>> about ImageJ? >>> >>> Are ImageJ-users left alone? >>> >>> Clueless >>> >>> Herbie >>> >>> :::::::::::::::::::::::::::::::::::::::::: >>> Am 29.06.16 um 17:39 schrieb Dan McDonald: >>> >>> Thank you Tiago and Curtis. >>> >>>> >>>> Yes, my missing step was to explicitly subscribe to the FFMPEG update >>>> site. >>>> >>>> I am now up and running! >>>> >>>> Dan >>>> >>>> -----Original Message----- >>>> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of >>>> Tiago >>>> Ferreira >>>> Sent: Wednesday, June 29, 2016 10:43 AM >>>> To: [hidden email] >>>> Subject: Re: Alternatives to ImageJ >>>> >>>> There must be a step I'm missing. I do not have the File>Import>Movie >>>> >>>>> >>>>> option and it doesn't show up in Command Finder. >>>> >>>> >>>> Dear Dan, >>>> >>>> Ensure your ImageJ is subscribed to the FFMPEG update site[1]: >>>> When I do it with Ubuntu 16.04 on a freshly downloaded Fiji >>>> installation, >>>> the following files are downloaded: >>>> * /plugins/FFMPEG_IO.jar >>>> * /lib/linux64/libffmpeg.so >>>> >>>> The commands (implemented through FFMPEG_IO.jar) become available upon >>>> restart: >>>> * File > Import > Movie (FFMPEG)... >>>> * File > Save As > Movie (FFMPEG).. >>>> >>>> >>>> Perhaps the files you mention (jars/ffmpeg.jar and >>>> jars/linux64/ffmpeg-linux-x86_64.jar) are from a different update site, >>>> or >>>> you have installed them manually? In either case, the Updater should be >>>> able >>>> to help you[2] >>>> >>>> [1] http://imagej.net/How_to_follow_a_3rd_party_update_site >>>> [2] http://imagej.net/Updater >>>> >>>> -tiago >>>> >>>> -- >>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>>> >>>> -- >>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>>> >>>> >>>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>> >>> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> >> > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Adrian Daerr-2
Dear Adrian,
thanks for the input! Actually I did already search in this direction but without great success (no real simple approach). I shall have a closer look at the linked pages. "I'm just being curious: what are your reasons not to follow the other straightforward approach of using Fiji (which, I am sure you know, Is Just ImageJ, and which strives at being compatible with imagej 1) ? The answer is simple: First, I like lean solutions. Second, I like applications that are in the public domain. My interest in integrating FFMPEG to ImageJ is minor, because personally I see no problem in converting videos by using one of the available free tools or by using FFMPEG from the terminal. Finally, I mostly deal with avi-files and don't need any video conversion. Best Herbie :::::::::::::::::::::::::::::::::::::::::: Am 29.06.16 um 20:11 schrieb Adrian Daerr: > Dear Herbie, > >> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ 1.x? >> >> Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a >> Mac? >> >> Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. > > You may have to play with environment variables and/or use otool and > install_name_tool so that the libraries are found: > > http://www.chilkatforum.com/questions/4235/how-to-distribute-a-dylib- > with-a-mac-os-x-application > http://superuser.com/questions/282450/where-do-i-set-dyld-library-path-on-mac-os-x-and-is-it-a-good-idea > > https://developer.apple.com/library/mac/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/UsingDynamicLibraries.html > > >> Maybe a solution using FFMPEG as a compiled command line tool instead of >> platform-specific libraries would be a better solution but there may be >> reasons to not follow this straightforward approach. > > I'm just being curious: what are your reasons not to follow the other > straightforward approach of using Fiji (which, I am sure you know, Is > Just ImageJ, and which strives at being compatible with imagej 1) ? > > good luck, > Adrian > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by ctrueden
Thanks Curtis!
"Check the java.library.path system property." Ok, I stumbled across it... It seems as if Apple follows a quite intricate approach... I won't spend too much time for this anymore (cf. my reply to Adrian). Best Herbie ::::::::::::::::::::::::::::::::::::::::::: Am 29.06.16 um 20:02 schrieb Curtis Rueden: > Hi Herbie, > >> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ 1.x? > > Unlikely "impossible", but I do not know how difficult it would be, and I > do not have time to experiment right now. Wayne probably has a better idea. > >> Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a > Mac? > > Check the java.library.path system property. > > Regards, > Curtis > > -- > Curtis Rueden > LOCI software architect - http://loci.wisc.edu/software > ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden > Did you know ImageJ has a forum? http://forum.imagej.net/ > > > On Wed, Jun 29, 2016 at 12:47 PM, Herbie <[hidden email]> wrote: > >> Dear Curtis! >> >> >> "ImageJ 1.x does not use the ImageJ Launcher component, which sets the >> java.library.path as appropriate to handle platform-dependent libraries. >> So in cases like this, using plain ImageJ 1.x is not the easiest path." >> >> >> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ 1.x? >> >> Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a Mac? >> >> Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. >> >> Maybe a solution using FFMPEG as a compiled command line tool instead of >> platform-specific libraries would be a better solution but there may be >> reasons to not follow this straightforward approach. >> >> Best >> >> Herbie >> >> ::::::::::::::::::::::::::::::::::::::::::: >> >> Am 29.06.16 um 19:25 schrieb Curtis Rueden: >> >> Hi Herbie, >>> >>> Well understood, Fiji uses the Updater function for this purpose but >>>> what about ImageJ? >>>> >>> >>> Yes, the updater is part of the ImageJ2 project, upon which Fiji is built. >>> >>> Are ImageJ-users left alone? >>>> >>> >>> ImageJ 1.x does not use the ImageJ Launcher component, which sets the >>> java.library.path as appropriate to handle platform-dependent libraries. >>> So >>> in cases like this, using plain ImageJ 1.x is not the easiest path. >>> >>> Regards, >>> Curtis >>> >>> -- >>> Curtis Rueden >>> LOCI software architect - http://loci.wisc.edu/software >>> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden >>> Did you know ImageJ has a forum? http://forum.imagej.net/ >>> >>> >>> On Wed, Jun 29, 2016 at 12:12 PM, Herbie <[hidden email]> wrote: >>> >>> Dear experts, >>>> >>>> one of the nice features of ImageJ is that you can increase its >>>> capabilities by putting the corresponding IJ-PlugIns to the IJ >>>> plugins-folder and to remove them if they are no longer needed. >>>> >>>> Moving the downloaded files "FFMPEG_IO.jar" and "libffmpeg.dylib" (for >>>> OSX) to the IJ plugins-folder won't do the trick because the latter is a >>>> library and it would really be helpful to get some advice of how and >>>> where >>>> to install it. >>>> >>>> Well understood, Fiji uses the Updater function for this purpose but what >>>> about ImageJ? >>>> >>>> Are ImageJ-users left alone? >>>> >>>> Clueless >>>> >>>> Herbie >>>> >>>> :::::::::::::::::::::::::::::::::::::::::: >>>> Am 29.06.16 um 17:39 schrieb Dan McDonald: >>>> >>>> Thank you Tiago and Curtis. >>>> >>>>> >>>>> Yes, my missing step was to explicitly subscribe to the FFMPEG update >>>>> site. >>>>> >>>>> I am now up and running! >>>>> >>>>> Dan >>>>> >>>>> -----Original Message----- >>>>> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of >>>>> Tiago >>>>> Ferreira >>>>> Sent: Wednesday, June 29, 2016 10:43 AM >>>>> To: [hidden email] >>>>> Subject: Re: Alternatives to ImageJ >>>>> >>>>> There must be a step I'm missing. I do not have the File>Import>Movie >>>>> >>>>>> >>>>>> option and it doesn't show up in Command Finder. >>>>> >>>>> >>>>> Dear Dan, >>>>> >>>>> Ensure your ImageJ is subscribed to the FFMPEG update site[1]: >>>>> When I do it with Ubuntu 16.04 on a freshly downloaded Fiji >>>>> installation, >>>>> the following files are downloaded: >>>>> * /plugins/FFMPEG_IO.jar >>>>> * /lib/linux64/libffmpeg.so >>>>> >>>>> The commands (implemented through FFMPEG_IO.jar) become available upon >>>>> restart: >>>>> * File > Import > Movie (FFMPEG)... >>>>> * File > Save As > Movie (FFMPEG).. >>>>> >>>>> >>>>> Perhaps the files you mention (jars/ffmpeg.jar and >>>>> jars/linux64/ffmpeg-linux-x86_64.jar) are from a different update site, >>>>> or >>>>> you have installed them manually? In either case, the Updater should be >>>>> able >>>>> to help you[2] >>>>> >>>>> [1] http://imagej.net/How_to_follow_a_3rd_party_update_site >>>>> [2] http://imagej.net/Updater >>>>> >>>>> -tiago >>>>> >>>>> -- >>>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>>>> >>>>> -- >>>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>>>> >>>>> >>>>> -- >>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>>> >>>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>> >>> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Herbie
Dear Herbie,
On 29.06.2016 20:21, Herbie wrote: > > The answer is simple: > First, I like lean solutions. > Second, I like applications that are in the public domain. First, "public domain" is a concept that exists mainly in the US and is nonexistent in other jurisdictions (sorry for the wording, I'm not a law expert). Both ImageJ2 and Fiji are open source and under permissive licenses. Second, I wonder why you're using a Mac, as OSX is obviously not in the public domain. > My interest in integrating FFMPEG to ImageJ is minor, because personally > I see no problem in converting videos by using one of the available free > tools or by using FFMPEG from the terminal. Finally, I mostly deal with > avi-files and don't need any video conversion. > Thanks for your contribution to this discussion. Jan > > :::::::::::::::::::::::::::::::::::::::::: > Am 29.06.16 um 20:11 schrieb Adrian Daerr: >> Dear Herbie, >> >>> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ >>> 1.x? >>> >>> Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a >>> Mac? >>> >>> Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. >> >> You may have to play with environment variables and/or use otool and >> install_name_tool so that the libraries are found: >> >> http://www.chilkatforum.com/questions/4235/how-to-distribute-a-dylib- >> with-a-mac-os-x-application >> http://superuser.com/questions/282450/where-do-i-set-dyld-library-path-on-mac-os-x-and-is-it-a-good-idea >> >> >> https://developer.apple.com/library/mac/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/UsingDynamicLibraries.html >> >> >> >>> Maybe a solution using FFMPEG as a compiled command line tool instead of >>> platform-specific libraries would be a better solution but there may be >>> reasons to not follow this straightforward approach. >> >> I'm just being curious: what are your reasons not to follow the other >> straightforward approach of using Fiji (which, I am sure you know, Is >> Just ImageJ, and which strives at being compatible with imagej 1) ? >> >> good luck, >> Adrian >> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Dear Jan,
evidently I can't take your reply too seriously but it is interesting that you care about my answer to a merely curious question of Adrian. 2. Maybe an OS is an application, maybe not. 1. ImageJ-1 lacks any licenses, ImageJ-2 doesn't. Of course there are IJ-PlugIns--that do not come preinstalled with ImageJ-1--that come with a more or less restrictive license, but I'm free to use or to avoid them. In fact, if I wanted to, I could not simply sell my extremely advanced IJ-plugins bundled with ImageJ-2, but I could with ImageJ-1. With respect to the more important FFMPEG-question I haven't been successful. The command line java -jar /Applications/ImageJ/ij.jar -ijpath /Applications/ImageJ/ -Djava.library.path=/Applications/ImageJ/libffmpeg.dylib doesn't work and I tried quite some other suggestions found on the web. I shall stop with this problem for now because it isn't relevant for me. Good day Herbie :::::::::::::::::::::::::::::::::::::::::: Am 30.06.16 um 15:44 schrieb Jan Eglinger: > Dear Herbie, > > On 29.06.2016 20:21, Herbie wrote: >> >> The answer is simple: >> First, I like lean solutions. >> Second, I like applications that are in the public domain. > > First, "public domain" is a concept that exists mainly in the US and is > nonexistent in other jurisdictions (sorry for the wording, I'm not a law > expert). Both ImageJ2 and Fiji are open source and under permissive > licenses. > > Second, I wonder why you're using a Mac, as OSX is obviously not in the > public domain. > > >> My interest in integrating FFMPEG to ImageJ is minor, because personally >> I see no problem in converting videos by using one of the available free >> tools or by using FFMPEG from the terminal. Finally, I mostly deal with >> avi-files and don't need any video conversion. >> > > Thanks for your contribution to this discussion. > > Jan > > > >> >> :::::::::::::::::::::::::::::::::::::::::: >> Am 29.06.16 um 20:11 schrieb Adrian Daerr: >>> Dear Herbie, >>> >>>> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ >>>> 1.x? >>>> >>>> Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a >>>> Mac? >>>> >>>> Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. >>> >>> You may have to play with environment variables and/or use otool and >>> install_name_tool so that the libraries are found: >>> >>> http://www.chilkatforum.com/questions/4235/how-to-distribute-a-dylib- >>> with-a-mac-os-x-application >>> http://superuser.com/questions/282450/where-do-i-set-dyld-library-path-on-mac-os-x-and-is-it-a-good-idea >>> >>> >>> >>> https://developer.apple.com/library/mac/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/UsingDynamicLibraries.html >>> >>> >>> >>> >>>> Maybe a solution using FFMPEG as a compiled command line tool >>>> instead of >>>> platform-specific libraries would be a better solution but there may be >>>> reasons to not follow this straightforward approach. >>> >>> I'm just being curious: what are your reasons not to follow the other >>> straightforward approach of using Fiji (which, I am sure you know, Is >>> Just ImageJ, and which strives at being compatible with imagej 1) ? >>> >>> good luck, >>> Adrian >>> > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Sarah Heissenberger
As a side note to all the other directions, and depending on what you're looking to do with the 'processing', you might want to check out Blender's Video Sequence Editor (VSE) combined with the Compositing options (I'm sure some YouTube tutorials would get you oriented to the basics of what can and can't be done).
It might have the things you need, and good to be aware of even if it doesn't ;) Neil -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Sarah Heissenberger Sent: Tuesday, June 28, 2016 2:58 PM To: [hidden email] Subject: Alternatives to ImageJ Hi all, I am currently using ImageJ to assist with my research in behavioral ecotoxicology. I was curious as to whether someone could suggest an alternative to ImageJ that can process longer videos (10-15 minutes), and also videos that are in MP4 format. Any advice would be much appreciated. Thanks ! -Sarah -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html ________________________________ This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited. If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments). -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Herbie
Hi Herbie,
> I could not simply sell my extremely advanced IJ-plugins bundled with > ImageJ-2, but I could with ImageJ-1. Actually, you can. See: http://imagej.net/Licensing Commercial use is permitted, as is withholding the source. That is why the BSD class of licenses are known as "permissive" licenses. http://imagej.net/BSD We chose BSD for ImageJ2 because it was one of the most permissive possible choices, so that the libraries could be used in all ways similar to ImageJ1. > java -jar /Applications/ImageJ/ij.jar -ijpath /Applications/ImageJ/ -Djava.library.path=/Applications/ImageJ/libffmpeg.dylib > doesn't work The java.library.path must point at directories, not files. Regards, Curtis -- Curtis Rueden LOCI software architect - http://loci.wisc.edu/software ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden Did you know ImageJ has a forum? http://forum.imagej.net/ On Thu, Jun 30, 2016 at 9:42 AM, Herbie <[hidden email]> wrote: > Dear Jan, > > evidently I can't take your reply too seriously but it is interesting that > you care about my answer to a merely curious question of Adrian. > > 2. > Maybe an OS is an application, maybe not. > > 1. > ImageJ-1 lacks any licenses, ImageJ-2 doesn't. > Of course there are IJ-PlugIns--that do not come preinstalled with > ImageJ-1--that come with a more or less restrictive license, but I'm free > to use or to avoid them. > > In fact, if I wanted to, I could not simply sell my extremely advanced > IJ-plugins bundled with ImageJ-2, but I could with ImageJ-1. > > > With respect to the more important FFMPEG-question I haven't been > successful. > > The command line > > java -jar /Applications/ImageJ/ij.jar -ijpath /Applications/ImageJ/ > -Djava.library.path=/Applications/ImageJ/libffmpeg.dylib > > doesn't work and I tried quite some other suggestions found on the web. I > shall stop with this problem for now because it isn't relevant for me. > > > Good day > > Herbie > > :::::::::::::::::::::::::::::::::::::::::: > Am 30.06.16 um 15:44 schrieb Jan Eglinger: > > Dear Herbie, >> >> On 29.06.2016 20:21, Herbie wrote: >> >>> >>> The answer is simple: >>> First, I like lean solutions. >>> Second, I like applications that are in the public domain. >>> >> >> First, "public domain" is a concept that exists mainly in the US and is >> nonexistent in other jurisdictions (sorry for the wording, I'm not a law >> expert). Both ImageJ2 and Fiji are open source and under permissive >> licenses. >> >> Second, I wonder why you're using a Mac, as OSX is obviously not in the >> public domain. >> >> >> My interest in integrating FFMPEG to ImageJ is minor, because personally >>> I see no problem in converting videos by using one of the available free >>> tools or by using FFMPEG from the terminal. Finally, I mostly deal with >>> avi-files and don't need any video conversion. >>> >>> >> Thanks for your contribution to this discussion. >> >> Jan >> >> >> >> >>> :::::::::::::::::::::::::::::::::::::::::: >>> Am 29.06.16 um 20:11 schrieb Adrian Daerr: >>> >>>> Dear Herbie, >>>> >>>> Does that mean it is impossible to use "libffmpeg.dylib" with ImageJ >>>>> 1.x? >>>>> >>>>> Where does "FFMPEG_IO.jar" (which works) expect "libffmpeg.dylib" on a >>>>> Mac? >>>>> >>>>> Apparently "1.6.0.jdk > Contents > Libraries" isn't the correct place. >>>>> >>>> >>>> You may have to play with environment variables and/or use otool and >>>> install_name_tool so that the libraries are found: >>>> >>>> http://www.chilkatforum.com/questions/4235/how-to-distribute-a-dylib- >>>> with-a-mac-os-x-application >>>> >>>> http://superuser.com/questions/282450/where-do-i-set-dyld-library-path-on-mac-os-x-and-is-it-a-good-idea >>>> >>>> >>>> >>>> >>>> https://developer.apple.com/library/mac/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/UsingDynamicLibraries.html >>>> >>>> >>>> >>>> >>>> Maybe a solution using FFMPEG as a compiled command line tool >>>>> instead of >>>>> platform-specific libraries would be a better solution but there may be >>>>> reasons to not follow this straightforward approach. >>>>> >>>> >>>> I'm just being curious: what are your reasons not to follow the other >>>> straightforward approach of using Fiji (which, I am sure you know, Is >>>> Just ImageJ, and which strives at being compatible with imagej 1) ? >>>> >>>> good luck, >>>> Adrian >>>> >>>> >> > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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