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Creating an XML file

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Wilson R S (AT)

Creating an XML file

Hi Listers

Is there a way that I can get imageJ to create an XML file?

Have tried the saveTextFileDemo but not been very successful (my java is
not the best).

Thanks in advance

Rhod

Wilson R S (AT)

Re: Creating an XML file

I should have probably stated that its XML text not images.
Script is below

<?xml version="1.0" encoding="UTF-8"?>
<ZereneStackerBatchScript>
<WrittenBy value="Zerene Stacker 1.02 Build T200912272255" />
<BatchQueue>
<Batches length="1">
<Batch>
<Sources length="1">
<Source value="C:\Documents and
Settings\rswilson\Desktop\ImageJ\Fusion Testing\Method 2\Prcies
430.2\Sample 2\15 at 10\Registered" />
</Sources>
<ProjectDispositionCode value="101" />
<Tasks length="2">
<Task>
<OutputImageDispositionCode value="4" />
<OutputImagesDesignatedFolder value="C:\Documents and
Settings\rswilson\Desktop\ImageJ\Fusion Testing\Method 2\Prcies
430.2\Sample 2\Output" />
<Preferences>
<AlignmentControl.AlignmentSettingsChanged value="false"
/>
<AlignmentControl.AllowRotation value="true" />
<AlignmentControl.AllowScale value="true" />
<AlignmentControl.AllowShiftX value="true" />
<AlignmentControl.AllowShiftY value="true" />
<AlignmentControl.BrightnessSettingsChanged value="false"
/>
<AlignmentControl.CorrectBrightness value="true" />
<AlignmentControl.MaxRelDegRotation value="20.0" />
<AlignmentControl.MaxRelPctScale value="20.0" />
<AlignmentControl.MaxRelPctShiftX value="20.0" />
<AlignmentControl.MaxRelPctShiftY value="20.0" />
<AlignmentControl.Order.Automatic value="true" />
<AlignmentControl.Order.NarrowFirst value="true" />
<AllowReporting.UsageStatistics value="true" />
<ColorManagement.InputOption
value="Use_EXIF_and_DCF_rules" />
<ColorManagement.InputOption.AssumedProfile value="sRGB
IEC61966-2.1" />
<ColorManagement.OutputOption value="CopyInput" />
<DepthMapControl.ContrastThresholdLevel
value="1.9073487E-7" />
<DepthMapControl.ContrastThresholdPercentile value="0.0"
/>
<DepthMapControl.EstimationRadius value="5" />
<DepthMapControl.SmoothingRadius value="2" />
<DepthMapControl.UseFixedContrastThresholdLevel
value="false" />
<DepthMapControl.UseFixedContrastThresholdPercentile
value="true" />
<FileIO.UseExternalTIFFReader value="false" />
<OutputImageNaming.Template value="{datetime} ZS {method}"
/>
<Prerotation.Degrees value="0" />
<Prerotation.Selected value="false" />
<Presize.UserSetting.Scale value="1.0" />
<Presize.UserSetting.Selected value="false" />
<Presize.Working.Scale value="1.0" />
<PyramidControl.GritSuppressionMethod value="1" />
<PyramidControl.RetainUDRImage value="false" />
<SaveImage.BitsPerColor value="16" />
<SaveImage.CompressionQuality value="0.75" />
<SaveImage.FileType value="tif" />
<SaveImage.RescaleImageToAvoidOverflow value="false" />
<SkewSequence.FirstImage.MaximumShiftXPct value="-3.0" />
<SkewSequence.FirstImage.MaximumShiftYPct value="0.0" />
<SkewSequence.LastImage.MaximumShiftXPct value="3.0" />
<SkewSequence.LastImage.MaximumShiftYPct value="0.0" />
<SkewSequence.NumberOfOutputImages value="3" />
<SkewSequence.Selected value="false" />
<StereoOrdering.LeftRightIndexSeparation value="1" />
</Preferences>
<TaskIndicatorCode value="1" />
</Task>
<Task>
<OutputImageDispositionCode value="4" />
<OutputImagesDesignatedFolder value="C:\Documents and
Settings\rswilson\Desktop\ImageJ\Fusion Testing\Method 2\Prcies
430.2\Sample 2\Output" />
<Preferences>
<AlignmentControl.AlignmentSettingsChanged value="false"
/>
<AlignmentControl.AllowRotation value="true" />
<AlignmentControl.AllowScale value="true" />
<AlignmentControl.AllowShiftX value="true" />
<AlignmentControl.AllowShiftY value="true" />
<AlignmentControl.BrightnessSettingsChanged value="false"
/>
<AlignmentControl.CorrectBrightness value="true" />
<AlignmentControl.MaxRelDegRotation value="20.0" />
<AlignmentControl.MaxRelPctScale value="20.0" />
<AlignmentControl.MaxRelPctShiftX value="20.0" />
<AlignmentControl.MaxRelPctShiftY value="20.0" />
<AlignmentControl.Order.Automatic value="true" />
<AlignmentControl.Order.NarrowFirst value="true" />
<AllowReporting.UsageStatistics value="true" />
<ColorManagement.InputOption
value="Use_EXIF_and_DCF_rules" />
<ColorManagement.InputOption.AssumedProfile value="sRGB
IEC61966-2.1" />
<ColorManagement.OutputOption value="CopyInput" />
<DepthMapControl.ContrastThresholdLevel
value="1.9073487E-7" />
<DepthMapControl.ContrastThresholdPercentile value="0.0"
/>
<DepthMapControl.EstimationRadius value="5" />
<DepthMapControl.SmoothingRadius value="2" />
<DepthMapControl.UseFixedContrastThresholdLevel
value="false" />
<DepthMapControl.UseFixedContrastThresholdPercentile
value="true" />
<FileIO.UseExternalTIFFReader value="false" />
<OutputImageNaming.Template value="{datetime} ZS {method}"
/>
<Prerotation.Degrees value="0" />
<Prerotation.Selected value="false" />
<Presize.UserSetting.Scale value="1.0" />
<Presize.UserSetting.Selected value="false" />
<Presize.Working.Scale value="1.0" />
<PyramidControl.GritSuppressionMethod value="1" />
<PyramidControl.RetainUDRImage value="false" />
<SaveImage.BitsPerColor value="16" />
<SaveImage.CompressionQuality value="0.75" />
<SaveImage.FileType value="tif" />
<SaveImage.RescaleImageToAvoidOverflow value="false" />
<SkewSequence.FirstImage.MaximumShiftXPct value="-3.0" />
<SkewSequence.FirstImage.MaximumShiftYPct value="0.0" />
<SkewSequence.LastImage.MaximumShiftXPct value="3.0" />
<SkewSequence.LastImage.MaximumShiftYPct value="0.0" />
<SkewSequence.NumberOfOutputImages value="3" />
<SkewSequence.Selected value="false" />
<StereoOrdering.LeftRightIndexSeparation value="1" />
</Preferences>
<TaskIndicatorCode value="2" />
</Task>
</Tasks>
</Batch>
</Batches>
</BatchQueue>
</ZereneStackerBatchScript>

Tomas Karlsson-2

Re: Creating an XML file

i dont think ImageJ includes own classes for reading and writing XML files, instead you can use the java standard classes like: javax.xml.stream.XMLStreamWriter; (thats at least how i do it in one off my projects)

// Tomas
18 jan 2010 kl. 13.00 skrev Wilson R S (AT):

> I should have probably stated that its XML text not images.
> Script is below
>
>
> <?xml version="1.0" encoding="UTF-8"?>
> <ZereneStackerBatchScript>
> <WrittenBy value="Zerene Stacker 1.02 Build T200912272255" />
> <BatchQueue>
> <Batches length="1">
> <Batch>
> <Sources length="1">
> <Source value="C:\Documents and
> Settings\rswilson\Desktop\ImageJ\Fusion Testing\Method 2\Prcies
> 430.2\Sample 2\15 at 10\Registered" />
> </Sources>
> <ProjectDispositionCode value="101" />
> <Tasks length="2">
> <Task>
> <OutputImageDispositionCode value="4" />
> <OutputImagesDesignatedFolder value="C:\Documents and
> Settings\rswilson\Desktop\ImageJ\Fusion Testing\Method 2\Prcies
> 430.2\Sample 2\Output" />
> <Preferences>
> <AlignmentControl.AlignmentSettingsChanged value="false"
> />
> <AlignmentControl.AllowRotation value="true" />
> <AlignmentControl.AllowScale value="true" />
> <AlignmentControl.AllowShiftX value="true" />
> <AlignmentControl.AllowShiftY value="true" />
> <AlignmentControl.BrightnessSettingsChanged value="false"
> />
> <AlignmentControl.CorrectBrightness value="true" />
> <AlignmentControl.MaxRelDegRotation value="20.0" />
> <AlignmentControl.MaxRelPctScale value="20.0" />
> <AlignmentControl.MaxRelPctShiftX value="20.0" />
> <AlignmentControl.MaxRelPctShiftY value="20.0" />
> <AlignmentControl.Order.Automatic value="true" />
> <AlignmentControl.Order.NarrowFirst value="true" />
> <AllowReporting.UsageStatistics value="true" />
> <ColorManagement.InputOption
> value="Use_EXIF_and_DCF_rules" />
> <ColorManagement.InputOption.AssumedProfile value="sRGB
> IEC61966-2.1" />
> <ColorManagement.OutputOption value="CopyInput" />
> <DepthMapControl.ContrastThresholdLevel
> value="1.9073487E-7" />
> <DepthMapControl.ContrastThresholdPercentile value="0.0"
> />
> <DepthMapControl.EstimationRadius value="5" />
> <DepthMapControl.SmoothingRadius value="2" />
> <DepthMapControl.UseFixedContrastThresholdLevel
> value="false" />
> <DepthMapControl.UseFixedContrastThresholdPercentile
> value="true" />
> <FileIO.UseExternalTIFFReader value="false" />
> <OutputImageNaming.Template value="{datetime} ZS {method}"
> />
> <Prerotation.Degrees value="0" />
> <Prerotation.Selected value="false" />
> <Presize.UserSetting.Scale value="1.0" />
> <Presize.UserSetting.Selected value="false" />
> <Presize.Working.Scale value="1.0" />
> <PyramidControl.GritSuppressionMethod value="1" />
> <PyramidControl.RetainUDRImage value="false" />
> <SaveImage.BitsPerColor value="16" />
> <SaveImage.CompressionQuality value="0.75" />
> <SaveImage.FileType value="tif" />
> <SaveImage.RescaleImageToAvoidOverflow value="false" />
> <SkewSequence.FirstImage.MaximumShiftXPct value="-3.0" />
> <SkewSequence.FirstImage.MaximumShiftYPct value="0.0" />
> <SkewSequence.LastImage.MaximumShiftXPct value="3.0" />
> <SkewSequence.LastImage.MaximumShiftYPct value="0.0" />
> <SkewSequence.NumberOfOutputImages value="3" />
> <SkewSequence.Selected value="false" />
> <StereoOrdering.LeftRightIndexSeparation value="1" />
> </Preferences>
> <TaskIndicatorCode value="1" />
> </Task>
> <Task>
> <OutputImageDispositionCode value="4" />
> <OutputImagesDesignatedFolder value="C:\Documents and
> Settings\rswilson\Desktop\ImageJ\Fusion Testing\Method 2\Prcies
> 430.2\Sample 2\Output" />
> <Preferences>
> <AlignmentControl.AlignmentSettingsChanged value="false"
> />
> <AlignmentControl.AllowRotation value="true" />
> <AlignmentControl.AllowScale value="true" />
> <AlignmentControl.AllowShiftX value="true" />
> <AlignmentControl.AllowShiftY value="true" />
> <AlignmentControl.BrightnessSettingsChanged value="false"
> />
> <AlignmentControl.CorrectBrightness value="true" />
> <AlignmentControl.MaxRelDegRotation value="20.0" />
> <AlignmentControl.MaxRelPctScale value="20.0" />
> <AlignmentControl.MaxRelPctShiftX value="20.0" />
> <AlignmentControl.MaxRelPctShiftY value="20.0" />
> <AlignmentControl.Order.Automatic value="true" />
> <AlignmentControl.Order.NarrowFirst value="true" />
> <AllowReporting.UsageStatistics value="true" />
> <ColorManagement.InputOption
> value="Use_EXIF_and_DCF_rules" />
> <ColorManagement.InputOption.AssumedProfile value="sRGB
> IEC61966-2.1" />
> <ColorManagement.OutputOption value="CopyInput" />
> <DepthMapControl.ContrastThresholdLevel
> value="1.9073487E-7" />
> <DepthMapControl.ContrastThresholdPercentile value="0.0"
> />
> <DepthMapControl.EstimationRadius value="5" />
> <DepthMapControl.SmoothingRadius value="2" />
> <DepthMapControl.UseFixedContrastThresholdLevel
> value="false" />
> <DepthMapControl.UseFixedContrastThresholdPercentile
> value="true" />
> <FileIO.UseExternalTIFFReader value="false" />
> <OutputImageNaming.Template value="{datetime} ZS {method}"
> />
> <Prerotation.Degrees value="0" />
> <Prerotation.Selected value="false" />
> <Presize.UserSetting.Scale value="1.0" />
> <Presize.UserSetting.Selected value="false" />
> <Presize.Working.Scale value="1.0" />
> <PyramidControl.GritSuppressionMethod value="1" />
> <PyramidControl.RetainUDRImage value="false" />
> <SaveImage.BitsPerColor value="16" />
> <SaveImage.CompressionQuality value="0.75" />
> <SaveImage.FileType value="tif" />
> <SaveImage.RescaleImageToAvoidOverflow value="false" />
> <SkewSequence.FirstImage.MaximumShiftXPct value="-3.0" />
> <SkewSequence.FirstImage.MaximumShiftYPct value="0.0" />
> <SkewSequence.LastImage.MaximumShiftXPct value="3.0" />
> <SkewSequence.LastImage.MaximumShiftYPct value="0.0" />
> <SkewSequence.NumberOfOutputImages value="3" />
> <SkewSequence.Selected value="false" />
> <StereoOrdering.LeftRightIndexSeparation value="1" />
> </Preferences>
> <TaskIndicatorCode value="2" />
> </Task>
> </Tasks>
> </Batch>
> </Batches>
> </BatchQueue>
> </ZereneStackerBatchScript>

Wilson R S (AT)

Re: Creating an XML file

I there, tanks for that.
Is there an easier way for example outputting as a text file and then
renaming and altering the file extension?

Rhod

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
Tomas Karlsson
Sent: 18 January 2010 15:45
To: [hidden email]
Subject: Re: Creating an XML file

i dont think ImageJ includes own classes for reading and writing XML
files, instead you can use the java standard classes like:
javax.xml.stream.XMLStreamWriter; (thats at least how i do it in one off
my projects)

// Tomas
18 jan 2010 kl. 13.00 skrev Wilson R S (AT):

{method}"

> />
> <Prerotation.Degrees value="0" />
> <Prerotation.Selected value="false" />
> <Presize.UserSetting.Scale value="1.0" />
> <Presize.UserSetting.Selected value="false" />
> <Presize.Working.Scale value="1.0" />
> <PyramidControl.GritSuppressionMethod value="1" />
> <PyramidControl.RetainUDRImage value="false" />
> <SaveImage.BitsPerColor value="16" />
> <SaveImage.CompressionQuality value="0.75" />
> <SaveImage.FileType value="tif" />
> <SaveImage.RescaleImageToAvoidOverflow value="false" />
> <SkewSequence.FirstImage.MaximumShiftXPct value="-3.0" />
> <SkewSequence.FirstImage.MaximumShiftYPct value="0.0" />
> <SkewSequence.LastImage.MaximumShiftXPct value="3.0" />
> <SkewSequence.LastImage.MaximumShiftYPct value="0.0" />
> <SkewSequence.NumberOfOutputImages value="3" />
> <SkewSequence.Selected value="false" />
> <StereoOrdering.LeftRightIndexSeparation value="1" />
> </Preferences>
> <TaskIndicatorCode value="1" />
> </Task>
> <Task>
> <OutputImageDispositionCode value="4" />
> <OutputImagesDesignatedFolder value="C:\Documents and
> Settings\rswilson\Desktop\ImageJ\Fusion Testing\Method 2\Prcies
> 430.2\Sample 2\Output" />
> <Preferences>
> <AlignmentControl.AlignmentSettingsChanged value="false"
> />
> <AlignmentControl.AllowRotation value="true" />
> <AlignmentControl.AllowScale value="true" />
> <AlignmentControl.AllowShiftX value="true" />
> <AlignmentControl.AllowShiftY value="true" />
> <AlignmentControl.BrightnessSettingsChanged value="false"
> />
> <AlignmentControl.CorrectBrightness value="true" />
> <AlignmentControl.MaxRelDegRotation value="20.0" />
> <AlignmentControl.MaxRelPctScale value="20.0" />
> <AlignmentControl.MaxRelPctShiftX value="20.0" />
> <AlignmentControl.MaxRelPctShiftY value="20.0" />
> <AlignmentControl.Order.Automatic value="true" />
> <AlignmentControl.Order.NarrowFirst value="true" />
> <AllowReporting.UsageStatistics value="true" />
> <ColorManagement.InputOption
> value="Use_EXIF_and_DCF_rules" />
> <ColorManagement.InputOption.AssumedProfile value="sRGB
> IEC61966-2.1" />
> <ColorManagement.OutputOption value="CopyInput" />
> <DepthMapControl.ContrastThresholdLevel
> value="1.9073487E-7" />
> <DepthMapControl.ContrastThresholdPercentile value="0.0"
> />
> <DepthMapControl.EstimationRadius value="5" />
> <DepthMapControl.SmoothingRadius value="2" />
> <DepthMapControl.UseFixedContrastThresholdLevel
> value="false" />
> <DepthMapControl.UseFixedContrastThresholdPercentile
> value="true" />
> <FileIO.UseExternalTIFFReader value="false" />
> <OutputImageNaming.Template value="{datetime} ZS

{method}"

Wilson R S (AT)

Creating an XML file

In reply to this post by Wilson R S (AT)

Hi All,

Have been plugin away at this (no pun intended) and have got to a
working(ish) stage.
My problem is that when outputting the file, the macro missing out line
2 and part of line 3.

Everything else is working fine and as it supposed to. I was wondering
if anyone could help.
Have attached the code below, please note the output file needs to be
viewed with note pad or similar.

Rhod

------------------------------------------------------------------------
-------------------------
x = "E:\\ZereneBatch.xml";
t = "E:\\ZereneBatch.txt";
f = File.open(t);
File.delete(x);

print(f, "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\r");
File.append("<ZereneStackerBatchScript>\r",t);
File.append("<WrittenBy value=\"Zerene Stacker 1.02 Build
T200912272255\" />\r",t);
File.append("<BatchQueue>\r",t);
File.append("<Batches length=\"1\">\r",t);
File.append("<Batch>\r",t);
File.append("<Sources length=\"1\">\r",t);
File.append("<Source value=\"C:\\Documents and
Settings\\rswilson\\Desktop\\ImageJ\\Fusion Testing\\Method 2\\Prcies
430.2\\Sample 2\\15 at 10\\Registered\" />\r",t);
File.append("</Sources>\r",t);
File.append("<ProjectDispositionCode value=\"101\" />\r",t);
File.append("<Tasks length=\"2\">\r",t);
File.append("<Task>\r",t);
File.append("<OutputImageDispositionCode value=\"4\"
/>\r",t);
File.append("<OutputImagesDesignatedFolder
value=\"C:\\Documents and Settings\\rswilson\\Desktop\\ImageJ\\Fusion
Testing\\Method 2\\Prcies 430.2\\Sample 2\\Output\" />\r",t);
File.append("<Preferences>\r",t);
File.append("<AlignmentControl.AlignmentSettingsChanged
value=\"false\" />\r",t);
File.append("<AlignmentControl.AllowRotation
value=\"true\" />\r",t);
File.append("<AlignmentControl.AllowScale value=\"true\"
/>\r",t);
File.append("<AlignmentControl.AllowShiftX value=\"true\"
/>\r",t);
File.append("<AlignmentControl.AllowShiftY value=\"true\"
/>\r",t);
File.append("<AlignmentControl.BrightnessSettingsChanged
value=\"false\" />\r",t);
File.append("<AlignmentControl.CorrectBrightness
value=\"true\" />\r",t);
File.append("<AlignmentControl.MaxRelDegRotation
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.MaxRelPctScale
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.MaxRelPctShiftX
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.MaxRelPctShiftY
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.Order.Automatic
value=\"true\" />\r",t);
File.append("<AlignmentControl.Order.NarrowFirst
value=\"true\" />\r",t);
File.append("<AllowReporting.UsageStatistics
value=\"true\" />\r",t);
File.append("<ColorManagement.InputOption
value=\"Use_EXIF_and_DCF_rules\" />\r",t);
File.append("<ColorManagement.InputOption.AssumedProfile
value=\"sRGB IEC61966-2.1\" />\r",t);
File.append("<ColorManagement.OutputOption
value=\"CopyInput\" />\r",t);
File.append("<DepthMapControl.ContrastThresholdLevel
value=\"1.9073487E-7\" />\r",t);
File.append("<DepthMapControl.ContrastThresholdPercentile
value=\"0.0\" />\r",t);
File.append("<DepthMapControl.EstimationRadius value=\"5\"
/>\r",t);
File.append("<DepthMapControl.SmoothingRadius value=\"2\"
/>\r",t);

File.append("<DepthMapControl.UseFixedContrastThresholdLevel
value=\"false\" />\r",t);

File.append("<DepthMapControl.UseFixedContrastThresholdPercentile
value=\"true\" />\r",t);
File.append("<FileIO.UseExternalTIFFReader value=\"false\"
/>\r",t);
File.append("<OutputImageNaming.Template
value=\"{datetime} ZS {method}\" />\r",t);
File.append("<Prerotation.Degrees value=\"0\" />\r",t);
File.append("<Prerotation.Selected value=\"false\"
/>\r",t);
File.append("<Presize.UserSetting.Scale value=\"1.0\"
/>\r",t);
File.append("<Presize.UserSetting.Selected value=\"false\"
/>\r",t);
File.append("<Presize.Working.Scale value=\"1.0\"
/>\r",t);
File.append("<PyramidControl.GritSuppressionMethod
value=\"1\" />\r",t);
File.append("<PyramidControl.RetainUDRImage
value=\"false\" />\r",t);
File.append("<SaveImage.BitsPerColor value=\"16\"
/>\r",t);
File.append("<SaveImage.CompressionQuality value=\"0.75\"
/>\r",t);
File.append("<SaveImage.FileType value=\"tif\" />\r",t);
File.append("<SaveImage.RescaleImageToAvoidOverflow
value=\"false\" />\r",t);
File.append("<SkewSequence.FirstImage.MaximumShiftXPct
value=\"-3.0\" />\r",t);
File.append("<SkewSequence.FirstImage.MaximumShiftYPct
value=\"0.0\" />\r",t);
File.append("<SkewSequence.LastImage.MaximumShiftXPct
value=\"3.0\" />\r",t);
File.append("<SkewSequence.LastImage.MaximumShiftYPct
value=\"0.0\" />\r",t);
File.append("<SkewSequence.NumberOfOutputImages
value=\"3\" />\r",t);
File.append("<SkewSequence.Selected value=\"false\"
/>\r",t);
File.append("<StereoOrdering.LeftRightIndexSeparation
value=\"1\" />\r",t);
File.append("</Preferences>\r",t);
File.append("<TaskIndicatorCode value=\"1\" />\r",t);
File.append("</Task>\r",t);
File.append("<Task>\r",t);
File.append("<OutputImageDispositionCode value=\"4\"
/>\r",t);
File.append("<OutputImagesDesignatedFolder
value=\"C:\\Documents and Settings\\rswilson\\Desktop\\ImageJ\\Fusion
Testing\\Method 2\\Prcies 430.2\\Sample 2\\Output\" />\r",t);
File.append("<Preferences>\r",t);
File.append("<AlignmentControl.AlignmentSettingsChanged
value=\"false\" />\r",t);
File.append("<AlignmentControl.AllowRotation
value=\"true\" />\r",t);
File.append("<AlignmentControl.AllowScale value=\"true\"
/>\r",t);
File.append("<AlignmentControl.AllowShiftX value=\"true\"
/>\r",t);
File.append("<AlignmentControl.AllowShiftY value=\"true\"
/>\r",t);
File.append("<AlignmentControl.BrightnessSettingsChanged
value=\"false\" />\r",t);
File.append("<AlignmentControl.CorrectBrightness
value=\"true\" />\r",t);
File.append("<AlignmentControl.MaxRelDegRotation
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.MaxRelPctScale
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.MaxRelPctShiftX
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.MaxRelPctShiftY
value=\"20.0\" />\r",t);
File.append("<AlignmentControl.Order.Automatic
value=\"true\" />\r",t);
File.append("<AlignmentControl.Order.NarrowFirst
value=\"true\" />\r",t);
File.append("<AllowReporting.UsageStatistics
value=\"true\" />\r",t);
File.append("<ColorManagement.InputOption
value=\"Use_EXIF_and_DCF_rules\" />\r",t);
File.append("<ColorManagement.InputOption.AssumedProfile
value=\"sRGB IEC61966-2.1\" />\r",t);
File.append("<ColorManagement.OutputOption
value=\"CopyInput\" />\r",t);
File.append("<DepthMapControl.ContrastThresholdLevel
value=\"1.9073487E-7\" />\r",t);
File.append("<DepthMapControl.ContrastThresholdPercentile
value=\"0.0\" />\r",t);
File.append("<DepthMapControl.EstimationRadius value=\"5\"
/>\r",t);
File.append("<DepthMapControl.SmoothingRadius value=\"2\"
/>\r",t);

File.append("<DepthMapControl.UseFixedContrastThresholdLevel
value=\"false\" />\r",t);

File.append("<DepthMapControl.UseFixedContrastThresholdPercentile
value=\"true\" />\r",t);
File.append("<FileIO.UseExternalTIFFReader value=\"false\"
/>\r",t);
File.append("<OutputImageNaming.Template
value=\"{datetime} ZS {method}\" />\r",t);
File.append("<Prerotation.Degrees value=\"0\" />\r",t);
File.append("<Prerotation.Selected value=\"false\"
/>\r",t);
File.append("<Presize.UserSetting.Scale value=\"1.0\"
/>\r",t);
File.append("<Presize.UserSetting.Selected value=\"false\"
/>\r",t);
File.append("<Presize.Working.Scale value=\"1.0\"
/>\r",t);
File.append("<PyramidControl.GritSuppressionMethod
value=\"1\" />\r",t);
File.append("<PyramidControl.RetainUDRImage
value=\"false\" />\r",t);
File.append("<SaveImage.BitsPerColor value=\"16\"
/>\r",t);
File.append("<SaveImage.CompressionQuality value=\"0.75\"
/>\r",t);
File.append("<SaveImage.FileType value=\"tif\" />\r",t);
File.append("<SaveImage.RescaleImageToAvoidOverflow
value=\"false\" />\r",t);
File.append("<SkewSequence.FirstImage.MaximumShiftXPct
value=\"-3.0\" />\r",t);
File.append("<SkewSequence.FirstImage.MaximumShiftYPct
value=\"0.0\" />\r",t);
File.append("<SkewSequence.LastImage.MaximumShiftXPct
value=\"3.0\" />\r",t);
File.append("<SkewSequence.LastImage.MaximumShiftYPct
value=\"0.0\" />\r",t);
File.append("<SkewSequence.NumberOfOutputImages
value=\"3\" />\r",t);
File.append("<SkewSequence.Selected value=\"false\"
/>\r",t);
File.append("<StereoOrdering.LeftRightIndexSeparation
value=\"1\" />\r",t);
File.append("</Preferences>\r",t);
File.append("<TaskIndicatorCode value=\"2\" />\r",t);
File.append("</Task>\r",t);
File.append("</Tasks>\r",t);
File.append("</Batch>\r",t);
File.append("</Batches>\r",t);
File.append("</BatchQueue>\r",t);
File.append("</ZereneStackerBatchScript>\r",t);

File.close(f);
File.rename(t, x);

Tomas Karlsson-2

Re: Creating an XML file

In reply to this post by Wilson R S (AT)

19 jan 2010 kl. 11.52 skrev Wilson R S (AT):

> I there, tanks for that.
> Is there an easier way for example outputting as a text file and then
> renaming and altering the file extension?

A XML file is just a text file so if you save it with the XML file-ending and have it corectly encoded it will be a XML-file

// Tomas

import java.io.*;
import ij.*;
import ij.io.*;
import ij.plugin.*;
import javax.xml.stream.*;

public class Fio_ implements PlugIn { //

public void run(String arg){

String fn,dn;

// promt user for filename to save the file as
SaveDialog s = new SaveDialog("Save the xml file as ","bla",".xml");
fn = s.getFileName();
dn = s.getDirectory();
fn = dn + fn; // Concatenate to get the full pathname
// Write a Text file with XML statments - note that the quotes has to be handeled manualy
try{
FileOutputStream fos = new FileOutputStream(fn);
try{
OutputStreamWriter out = new OutputStreamWriter(fos, "UTF-8");
try{
out.write("<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n");
out.write("\t<ZereneStackerBatchScript>\n");
// And a loot more writes
out.close(); // Write the buffer and close the file
}
catch(IOException e){

}

}
catch(java.io.UnsupportedEncodingException e){
// should abort the rest of the code
}

}
catch (java.io.FileNotFoundException e){
// should abort the rest of the code
}

// Alternativly the propper way of writing a XML file
fn = fn + "_2";

XMLOutputFactory xof = XMLOutputFactory.newInstance();
XMLStreamWriter xtw = null;
try {
try {
xtw = xof.createXMLStreamWriter(new FileOutputStream(fn), "UTF-8");
xtw.writeStartDocument("utf-8","1.0");
xtw.writeCharacters("\n");
xtw.writeStartElement("ZereneStackerBatchScript");
xtw.writeCharacters("\n");
//...

xtw.writeEndElement(); // closing ZereneStackerBatchScript
xtw.writeEndDocument();
xtw.close();
} catch (XMLStreamException ex) {

}
} catch (FileNotFoundException ex) {

}

}

}

Prodanov Dimiter

Re: Creating an XML file

In reply to this post by Wilson R S (AT)

Dear Rod,

If you want full XML functionality you can look at the http://www.saxproject.org/. I think nowadays it is even part of the official Java SE. Otherwise you have to write your own parser.

Best regards,

Dimiter

Chris Mawata

Re: Creating an XML file

Prodanov Dimiter wrote:
> Dear Rod,
>
> If you want full XML functionality you can look at the http://www.saxproject.org/. I think nowadays it is even part of the official Java SE. Otherwise you have to write your own parser.
>
> Best regards,
>
> Dimiter
>
>
Rod, as said above you are much better off using the built in XML
packages since you then don't need extra jars on the classpath. (look at
the org.w3c.dom. and org.xml.sax packages). They are based on the
popular xerces and xalan packages from Apache. In the unlikely event
that you want to update just the xml functionality you can place xerces
and xalan in the lib/endorsed folder and they override the built in
versions.
Chris