Hi,
I get this message, in a plugin of mine that goes through all the jpegs in a directory, reads them, processes them then writes a result to a different directory. I have no clue as to why I sometimes see this error. Anyone have any experience with this? It seems to happen on windows XP, but not W2000. Jon |
Sorry for the email again. Does any one familiar with the ImageJ tool that
can perform volume rendering for the ROI or stack of segmented image. Thanks Ahmed |
In reply to this post by Jon Harman
Hi,
That happened to me yesterday too. It didn't work until i removed the " Thumbs.db" hidden file from the folder where the images are stored. I have no clue why that happens because I was working with the same images in the same folder before and the plugin runned normally. Cheers, Agnès 2006/5/16, Jon Harman <[hidden email]>: > > Hi, > > I get this message, in a plugin of mine that goes through all the jpegs > in a directory, reads them, processes them then writes a result to a > different directory. I have no clue as to why I sometimes see this > error. Anyone have any experience with this? It seems to happen on > windows XP, but not W2000. > > Jon > |
In reply to this post by Ahmed Khwaja
Hi,
On Tue, 16 May 2006, Ahmed Khwaja wrote: > Sorry for the email again. Does any one familiar with the ImageJ tool that > can perform volume rendering for the ROI or stack of segmented image. I only know about the Volume_Viewer, and if you are only interested in a ROI, you could set everything outside of the ROI to 0. Ciao, Dscho |
In reply to this post by Jon Harman
Dear Jon/Agnes,
The ZVI_reader is presumably being called from the HandleExtraFileTypes plugin which is distributed with ImageJ in the plugins/Input-Output folder. Here's the relevant code snippet : // ZVI file handler // Little-endian ZVI files start with d0 cf 11 e0. if (name.endsWith(".zvi") || (buf[0]==-48&& buf[1]==-49&&buf[2]==17&&buf[3]==-32)) { IJ.runPlugIn("ZVI_Reader", path); width = IMAGE_OPENED; return null; } Basically if ImageJ can't recognise a file it calls HandleExtraFileTypes to see if that contains a code snippet that will handle opening that file type. Your directory most likely contains a file that is being recognised by the code snippet to handle ZVI files - ie a file that ends in ZVI or starts with the 4 bytes d0 cf 11 e0. Presumably the Thumbs.db file does start with that 4 byte code and therefore is being opened inappropriately. I think someone has already noticed this problem and the latest version of the HandleExtraFileTypes plugin fixes it: http://rsb.info.nih.gov/ij/plugins/file-handler.html Best wishes, Greg. On 17/5/06 05:00, "IMAGEJ automatic digest system" <[hidden email]> wrote: > Date: Tue, 16 May 2006 14:58:05 -0700 > From: Jon Harman <[hidden email]> > Subject: Error: Plugin not found ZVI_Reader > > Hi, > > I get this message, in a plugin of mine that goes through all the jpegs > in a directory, reads them, processes them then writes a result to a > different directory. I have no clue as to why I sometimes see this > error. Anyone have any experience with this? It seems to happen on > windows XP, but not W2000. > > Jon -- Gregory Jefferis, PhD and: Research Fellow Department of Zoology St John's College University of Cambridge Cambridge Downing Street CB2 1TP Cambridge, CB2 3EJ United Kingdom Lab Tel: +44 (0)1223 336683 Office: +44 (0)1223 339899 Lab Fax: +44 (0)1223 336676 http://www.zoo.cam.ac.uk/zoostaff/jefferis.html [hidden email] |
In reply to this post by dscho
Hi
Try the VolumeJ Plugin, is impressive Manuel ----- Original Message ----- From: "Johannes Schindelin" <[hidden email]> To: <[hidden email]> Sent: Wednesday, May 17, 2006 1:10 PM Subject: Re: Volume rendering from ROI > Hi, > > On Tue, 16 May 2006, Ahmed Khwaja wrote: > > > Sorry for the email again. Does any one familiar with the ImageJ tool that > > can perform volume rendering for the ROI or stack of segmented image. > > I only know about the Volume_Viewer, and if you are only interested in a > ROI, you could set everything outside of the ROI to 0. > > Ciao, > Dscho |
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