Error: Plugin not found ZVI_Reader

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Error: Plugin not found ZVI_Reader

Jon Harman
Hi,

I get this message, in a plugin of mine that goes through all the jpegs
in a directory, reads them, processes them then writes a result to a
different directory.  I have no clue as to why I sometimes see this
error.  Anyone have any experience with this?  It seems to happen on
windows XP, but not W2000.

Jon
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Volume rendering from ROI

Ahmed Khwaja
Sorry for the email again. Does any one familiar with the ImageJ tool that
can perform volume rendering for the ROI or stack of segmented image.
Thanks
Ahmed
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Re: Error: Plugin not found ZVI_Reader

Agnès Sauleda Brossa
In reply to this post by Jon Harman
Hi,

That happened to me yesterday too. It didn't work until i removed the "
Thumbs.db" hidden file from the folder where the images are stored. I have
no clue why that happens because I was working with the same images in the
same folder before and the plugin runned normally.

Cheers,

Agnès

2006/5/16, Jon Harman <[hidden email]>:

>
> Hi,
>
> I get this message, in a plugin of mine that goes through all the jpegs
> in a directory, reads them, processes them then writes a result to a
> different directory.  I have no clue as to why I sometimes see this
> error.  Anyone have any experience with this?  It seems to happen on
> windows XP, but not W2000.
>
> Jon
>
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Re: Volume rendering from ROI

dscho
In reply to this post by Ahmed Khwaja
Hi,

On Tue, 16 May 2006, Ahmed Khwaja wrote:

> Sorry for the email again. Does any one familiar with the ImageJ tool that
> can perform volume rendering for the ROI or stack of segmented image.

I only know about the Volume_Viewer, and if you are only interested in a
ROI, you could set everything outside of the ROI to 0.

Ciao,
Dscho
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Re: Error: Plugin not found ZVI_Reader

Gregory Jefferis
In reply to this post by Jon Harman
Dear Jon/Agnes,

The ZVI_reader is presumably being called from the HandleExtraFileTypes
plugin which is distributed with ImageJ in the plugins/Input-Output folder.
Here's the relevant code snippet :

         // ZVI file handler
        // Little-endian ZVI files start with d0 cf 11 e0.
        if (name.endsWith(".zvi") || (buf[0]==-48&&
buf[1]==-49&&buf[2]==17&&buf[3]==-32)) {
            IJ.runPlugIn("ZVI_Reader", path);
            width = IMAGE_OPENED;
            return null;
        }

Basically if ImageJ can't recognise a file it calls HandleExtraFileTypes to
see if that contains a code snippet that will handle opening that file type.
Your directory most likely contains a file that is being recognised by the
code snippet to handle ZVI files - ie a file that ends in ZVI or starts with
the 4 bytes d0 cf 11 e0.  Presumably the Thumbs.db file does start with that
4 byte code and therefore is being opened inappropriately.

I think someone has already noticed this problem and the latest version of
the HandleExtraFileTypes plugin fixes it:

http://rsb.info.nih.gov/ij/plugins/file-handler.html

Best wishes,

Greg.

On 17/5/06 05:00, "IMAGEJ automatic digest system" <[hidden email]>
wrote:

> Date:    Tue, 16 May 2006 14:58:05 -0700
> From:    Jon Harman <[hidden email]>
> Subject: Error: Plugin not found ZVI_Reader
>
> Hi,
>
> I get this message, in a plugin of mine that goes through all the jpegs
> in a directory, reads them, processes them then writes a result to a
> different directory.  I have no clue as to why I sometimes see this
> error.  Anyone have any experience with this?  It seems to happen on
> windows XP, but not W2000.
>
> Jon

--
Gregory Jefferis, PhD                                   and:
Research Fellow    
Department of Zoology                                   St John's College
University of Cambridge                                 Cambridge
Downing Street                                          CB2 1TP
Cambridge, CB2 3EJ
United Kingdom

Lab Tel: +44 (0)1223 336683                     Office: +44 (0)1223 339899
Lab Fax: +44 (0)1223 336676

http://www.zoo.cam.ac.uk/zoostaff/jefferis.html           [hidden email]
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Re: Volume rendering from ROI

Manuel Urrutia Avisrror
In reply to this post by dscho
Hi
Try the VolumeJ Plugin, is impressive
Manuel
----- Original Message -----
From: "Johannes Schindelin" <[hidden email]>
To: <[hidden email]>
Sent: Wednesday, May 17, 2006 1:10 PM
Subject: Re: Volume rendering from ROI


> Hi,
>
> On Tue, 16 May 2006, Ahmed Khwaja wrote:
>
> > Sorry for the email again. Does any one familiar with the ImageJ tool
that
> > can perform volume rendering for the ROI or stack of segmented image.
>
> I only know about the Volume_Viewer, and if you are only interested in a
> ROI, you could set everything outside of the ROI to 0.
>
> Ciao,
> Dscho