Information about Landmarks

[Rodolfo Sanzana]

Hi,

Can anybody help me set my landmarks on ImageJ?
I have several issues

1.- As i "import image sequences” of th 125 files it only imports 35…. the log says V "xxxxx -- Lateral Xray 10-04-13, 17h 20m 29s 1.JPG: wrong size; 2804x1980 expected, 2800x1980 found” how can i correct this?
2.- Once i have the 35 files on one screen i put landmarks in the first image and the landmarks in the first image appear in the next images again
3.- How can i save all the 35 images landmarks x,y coordinates in one file, as the TPS?

Thank you

Rodolfo Sanzana
[hidden email]

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[Rasband, Wayne (NIH/NIMH) [E]]

On Nov 7, 2015, at 12:42 PM, Rodolfo Sanzana <[hidden email]> wrote:
>
> Hi,
>
> Can anybody help me set my landmarks on ImageJ?
> I have several issues
>
> 1.- As i "import image sequences” of th 125 files it only imports 35…. the log says V "xxxxx -- Lateral Xray 10-04-13, 17h 20m 29s 1.JPG: wrong size; 2804x1980 expected, 2800x1980 found” how can i correct this?

Enable the “Use virtual stack” option in the File>Import>Image Sequence dialog box.

> 2.- Once i have the 35 files on one screen i put landmarks in the first image and the landmarks in the first image appear in the next images again

In the latest ImageJ daily build (1.50e15), a point added to a stack image by the multi-point tool is only displayed when that image is displayed, as long as “Show all” is not checked in the point tool dialog box. The multi-point tool now also supports counters, similar to Cell Counter counters. You can upgrade to the daily build by using the Help>Update ImageJ command and selecting “daily build” from the drop down menu.

> 3.- How can i save all the 35 images landmarks x,y coordinates in one file, as the TPS?

The Analyze>Measure command displays the x,y coordinates and stack positions of the points in a multi-point selection.

-wayne

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[Rodolfo Sanzana]

Thank you,

So I'm assuming there's no way to do it automatically, you have to copy paste the x,y coordinates from the log tab into an excel, add the Lm=x at the top and the scale factor and  ID=xxxx at the bottom..... ?

Thank you

Atte.

R. Sanzana

> El 07-11-2015, a las 23:31, Rasband, Wayne (NIH/NIMH) [E] <[hidden email]> escribió:
>
>> On Nov 7, 2015, at 12:42 PM, Rodolfo Sanzana <[hidden email]> wrote:
>>
>> Hi,
>>
>> Can anybody help me set my landmarks on ImageJ?
>> I have several issues
>>
>> 1.- As i "import image sequences” of th 125 files it only imports 35…. the log says V "xxxxx -- Lateral Xray 10-04-13, 17h 20m 29s 1.JPG: wrong size; 2804x1980 expected, 2800x1980 found” how can i correct this?
>
> Enable the “Use virtual stack” option in the File>Import>Image Sequence dialog box.
>
>> 2.- Once i have the 35 files on one screen i put landmarks in the first image and the landmarks in the first image appear in the next images again
>
> In the latest ImageJ daily build (1.50e15), a point added to a stack image by the multi-point tool is only displayed when that image is displayed, as long as “Show all” is not checked in the point tool dialog box. The multi-point tool now also supports counters, similar to Cell Counter counters. You can upgrade to the daily build by using the Help>Update ImageJ command and selecting “daily build” from the drop down menu.
>
>> 3.- How can i save all the 35 images landmarks x,y coordinates in one file, as the TPS?
>
> The Analyze>Measure command displays the x,y coordinates and stack positions of the points in a multi-point selection.
>
> -wayne
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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