Latest update breaks "Add Slice"

[Olivier Burri]

Hi,

The latest update from Fiji (12.08.2014) breaks the Add Slice command on a multichannel Z stack

Error:
(Fiji Is Just) ImageJ 2.0.0-rc-11/1.49e; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 34MB of 18367MB (<1%)
 
java.lang.ArrayIndexOutOfBoundsException: 2
        at ij.CompositeImage.getLuts(CompositeImage.java:478)
        at net.imagej.legacy.translate.ColorTableHarmonizer.colorTablesFromImagePlus(ColorTableHarmonizer.java:431)
        at net.imagej.legacy.translate.ColorTableHarmonizer.updateDisplay(ColorTableHarmonizer.java:75)
        at net.imagej.legacy.translate.GrayDisplayCreator.grayCase(GrayDisplayCreator.java:167)
        at net.imagej.legacy.translate.GrayDisplayCreator.makeDisplay(GrayDisplayCreator.java:129)
        at net.imagej.legacy.translate.AbstractDisplayCreator.createDisplay(AbstractDisplayCreator.java:62)
        at net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:100)
        at net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:84)
        at net.imagej.legacy.LegacyImageMap.registerLegacyImage(LegacyImageMap.java:243)
        at net.imagej.legacy.DefaultLegacyHooks.registerImage(DefaultLegacyHooks.java:185)
        at ij.gui.ImageWindow.show(ImageWindow.java)
        at ij.gui.StackWindow.<init>(StackWindow.java:37)
        at ij.gui.StackWindow.<init>(StackWindow.java:24)
        at ij.ImagePlus.setStack(ImagePlus.java:645)
        at ij.ImagePlus.setStack(ImagePlus.java:668)
        at ij.plugin.StackEditor.addHyperstackChannelSliceOrFrame(StackEditor.java:145)
        at ij.plugin.StackEditor.addSlice(StackEditor.java:32)
        at ij.plugin.StackEditor.run(StackEditor.java:23)
        at ij.IJ.runPlugIn(IJ.java:172)
        at ij.Executer.runCommand(Executer.java:131)
        at ij.Executer.run(Executer.java:64)
        at java.lang.Thread.run(Thread.java:662)

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[Olivier Burri]

> The latest update from Fiji (12.08.2014) breaks the Add Slice command on a
> multichannel Z stack

To replicate the error:

Open the "Confocal Series" sample
Run "Add Slice" and select "Channel"

Best

Oli

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[Rasband, Wayne (NIH/NIMH) [E]]

On Aug 12, 2014, at 3:41 AM, Burri Olivier wrote:

>> The latest update from Fiji (12.08.2014) breaks the Add Slice command on a
>> multichannel Z stack
>
> To replicate the error:
>
> Open the "Confocal Series" sample
> Run "Add Slice" and select "Channel"

This regression is fixed in the latest ImageJ daily build (1.49f4). To upgrade, use the Help>Update ImageJ command and select "daily build" from the drop down menu.

To replicate the error, I needed to:

   Open the "Confocal Series" sample stack
   Use the "c" slider to change to channel 2
   Use the "z" slider to change to slice 12
   Run Image>Stacks>Add Slice and select "Channel"

-wayne

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