Problem with opening binary images in FIJI 1.49b

[Hanna_SN]

Dear ImageJ community,



I generated binary images ( tiff format) using ImageJ 1.48e. When I tried
to open them in FIJI 1.49b it did not read the images properly (the
location of black and white pixels was perturbed and their values were
changed from 0-1 to 254-255). Strangely, when I opened the same images by
pulling them from the file folder and dropping them to FIJI window they
opened correctly. I would be very grateful for any suggestions, what might
be the cause of such a behavior and how could I fix the problem with
opening my images.



Best regards,

Hanna

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Mark Hiner-2]

Hi Hanna,

Would you mind using "Help > Report a Bug" from Fiji? The 1.49b is the
version of your ImageJ 1, but it doesn't give us the full picture of the
state of your installation - for example, which update sites are enabled,
or whether particular libraries are up to date. This sounds like a bug in
ImageJ2 software, but it is good to know that everything current.

 Also, because you are seeing different behavior with drag and drop vs.
File > Open I would like to examine your dataset, as those functions should
behave equivalently (also, I am assuming you used File > Open here... there
are many ways to open datasets in Fiji, so if you can clarify specifically
what you did that is always helpful). If you are comfortable with your data
being public, it can be attached to the bug report generated by Help >
Report a Bug. If you would like your data to be private, then you can use
Help > Upload a Sample Image - which ensures it will only be used by
trusted Fiji developers/contributors for test purposes.

 In the mean time, you can run Edit > Options > ImageJ2 and uncheck "Use
SCIFIO when opening files." That should restore the ImageJ 1.x
functionality. After receiving the extra information and sample dataset, we
should be able to get things working in SCIFIO/ImageJ2 as well.

Thanks!
- Mark


On Wed, Jun 18, 2014 at 2:47 AM, Hanna Sas Nowosielska <
[hidden email]> wrote:

> Dear ImageJ community,
>
>
>
> I generated binary images ( tiff format) using ImageJ 1.48e. When I tried
> to open them in FIJI 1.49b it did not read the images properly (the
> location of black and white pixels was perturbed and their values were
> changed from 0-1 to 254-255). Strangely, when I opened the same images by
> pulling them from the file folder and dropping them to FIJI window they
> opened correctly. I would be very grateful for any suggestions, what might
> be the cause of such a behavior and how could I fix the problem with
> opening my images.
>
>
>
> Best regards,
>
> Hanna
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html