Tutorial on ImageJ

[Nicholas Ali]

All:

I am new to ImageJ and the mailing list. I plan to contribute and both
learn from this resource.

As a beginner I have been searching for a manual or tuturials on ImageJ to
get me started. The  Documentation Wikis tutorial link does not seem to
work for me? Where can I find help on using ImageJ?
My work is mainly in segmenting anatomy from the visible human project.

Your help is greatly appreciated.

Thansk,

Nicholas
PhD Student
University of Ottawa

[Albert Cardona]

Hi Nicholas,

For segmentation within ImageJ I have built TrakEM2:

http://www.ini.uzh.ch/~acardona/trakem2.html


In particular, you want to look at the AreaList segfmentation type (a 'label', but not pixel-based).
From such labels, meshes are made with marching cubes, exportable as DXF and wavefront
for further processing in other software such as Blender or Amira.

Let me know if you need help getting up and running.

Albert

> I am new to ImageJ and the mailing list. I plan to contribute and both
> learn from this resource.
>
> As a beginner I have been searching for a manual or tuturials on ImageJ to
>
> get me started. The  Documentation Wikis tutorial link does not seem to
> work for me? Where can I find help on using ImageJ?
> My work is mainly in segmenting anatomy from the visible human project.
>
> Your help is greatly appreciated.
>
> Thansk,
>
> Nicholas
> PhD Student
> University of Ottawa

--
Albert Cardona
http://www.mcdb.ucla.edu/Research/Hartenstein/acardona/

[Nicholas Ali]

Albert:

Greatly appreciated. I need to delve further into its capabilities to get
it to work for my needs.

Thanks a great deal.

Nicholas

> Hi Nicholas,
>
> For segmentation within ImageJ I have built TrakEM2:
>
> http://www.ini.uzh.ch/~acardona/trakem2.html
>
>
> In particular, you want to look at the AreaList segfmentation type (a
> 'label', but not pixel-based).
>>From such labels, meshes are made with marching cubes, exportable as DXF
>> and wavefront
> for further processing in other software such as Blender or Amira.
>
> Let me know if you need help getting up and running.
>
> Albert
>
>
>
>
>
>> I am new to ImageJ and the mailing list. I plan to contribute and both
>> learn from this resource.
>>
>> As a beginner I have been searching for a manual or tuturials on ImageJ
>> to
>>
>> get me started. The  Documentation Wikis tutorial link does not seem to
>> work for me? Where can I find help on using ImageJ?
>> My work is mainly in segmenting anatomy from the visible human project.
>>
>> Your help is greatly appreciated.
>>
>> Thansk,
>>
>> Nicholas
>> PhD Student
>> University of Ottawa
>
>
> --
> Albert Cardona
> http://www.mcdb.ucla.edu/Research/Hartenstein/acardona/
>

[Joachim Wesner]

Hi Nicholas,

there is actually quite a lot of documentation, both about the program use
"as is", the source code and how to use the macro language and even writing
your own plugins:

http://rsb.info.nih.gov/ij/docs/

Mit freundlichen Grüßen / Best regards

Joachim Wesner

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             Nicholas Ali                                                  
             <nali065@UOTTAWA.                                            
             CA>                                                        An
             Gesendet von:              [hidden email]                
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             GOV>                       Tutorial on ImageJ                
                                                                           
                                                                           
             19.01.2008 16:36                                              
                                                                           
                                                                           
              Bitte antworten                                              
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All:

I am new to ImageJ and the mailing list. I plan to contribute and both
learn from this resource.

As a beginner I have been searching for a manual or tuturials on ImageJ to
get me started. The  Documentation Wikis tutorial link does not seem to
work for me? Where can I find help on using ImageJ?
My work is mainly in segmenting anatomy from the visible human project.

Your help is greatly appreciated.

Thansk,

Nicholas
PhD Student
University of Ottawa



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