how to compress dynamic dicom file

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how to compress dynamic dicom file

maurel gerard
Hi!
I want to transform a serial dynamic frames (i.e.  300 frames 64*64 16 bit) in summed dynamic :
30 frames and each one is a 10 frames sum (new frame 1 = sum from 1 to 10 initial frames; new frame 2 = sum from 11 to 20...)
thanks for your help
gerard maurel
saint antoine hospital paris france 331 4928 2807
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Re: how to compress dynamic dicom file

jmutterer
Dear Gerard,
I think that the Grouped Z projector plugin might achieve exactly that. you
can get it from:
http://rsb.info.nih.gov/ij/plugins/group.html

Jerome

On Sat, Feb 7, 2009 at 10:35 AM, maurel gerard <[hidden email]>wrote:

> Hi!
> I want to transform a serial dynamic frames (i.e.  300 frames 64*64 16 bit)
> in summed dynamic :
> 30 frames and each one is a 10 frames sum (new frame 1 = sum from 1 to 10
> initial frames; new frame 2 = sum from 11 to 20...)
> thanks for your help
> gerard maurel
> saint antoine hospital paris france 331 4928 2807
>
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Re : Re: how to compress dynamic dicom file

maurel gerard
Thanks a lot
it is straigthforward

Another question if possible :
do you know a plugin to concatenate one dynamic serial slices to another one ?
thanks for your help

gerard maurel

----- Message d'origine -----
De: Jerome Mutterer <[hidden email]>javascript:parent.send('smtp')
Date: Samedi, Février 7, 2009 1:59 pm
Objet: Re: how to compress dynamic dicom file
À: [hidden email]

> Dear Gerard,
> I think that the Grouped Z projector plugin might achieve exactly
> that. you
> can get it from:
> http://rsb.info.nih.gov/ij/plugins/group.html
>
> Jerome
>
> On Sat, Feb 7, 2009 at 10:35 AM, maurel gerard
> <[hidden email]>wrote:
> > Hi!
> > I want to transform a serial dynamic frames (i.e.  300 frames
> 64*64 16 bit)
> > in summed dynamic :
> > 30 frames and each one is a 10 frames sum (new frame 1 = sum from
> 1 to 10
> > initial frames; new frame 2 = sum from 11 to 20...)
> > thanks for your help
> > gerard maurel
> > saint antoine hospital paris france 331 4928 2807
> >
>
>
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Re: Re : Re: how to compress dynamic dicom file

jmutterer
Hi Gerard,

a plugin to concatenate one dynamic serial slices to another


 That's a job for the concatenator plugin:
http://rsb.info.nih.gov/ij/plugins/concatenator.html

Many other interesting plugins related to image stacks are listed under the
'stacks' section
of the plugins page at: http://rsb.info.nih.gov/ij/plugins/index.html

Jerome.

On Sun, Feb 8, 2009 at 11:28 AM, maurel gerard <[hidden email]>wrote:

> Thanks a lot
> it is straigthforward
>
> Another question if possible :
> do you know a plugin to concatenate one dynamic serial slices to another
> one ?
> thanks for your help
>
> gerard maurel
>
> ----- Message d'origine -----
> De: Jerome Mutterer <[hidden email]
> >javascript:parent.send('smtp')
> Date: Samedi, Février 7, 2009 1:59 pm
> Objet: Re: how to compress dynamic dicom file
> À: [hidden email]
>
> > Dear Gerard,
> > I think that the Grouped Z projector plugin might achieve exactly
> > that. you
> > can get it from:
> > http://rsb.info.nih.gov/ij/plugins/group.html
> >
> > Jerome
> >
> > On Sat, Feb 7, 2009 at 10:35 AM, maurel gerard
> > <[hidden email]>wrote:
> > > Hi!
> > > I want to transform a serial dynamic frames (i.e.  300 frames
> > 64*64 16 bit)
> > > in summed dynamic :
> > > 30 frames and each one is a 10 frames sum (new frame 1 = sum from
> > 1 to 10
> > > initial frames; new frame 2 = sum from 11 to 20...)
> > > thanks for your help
> > > gerard maurel
> > > saint antoine hospital paris france 331 4928 2807
> > >
> >
> >
>
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Re : Re: Re : Re: how to compress dynamic dicom file

maurel gerard
Hi Jerome

Thanks one more time
the stacks section of the plugins page is exactly the solution for all my problems

gerard maurel

----- Message d'origine -----
De: Jerome Mutterer <[hidden email]>
Date: Dimanche, Février 8, 2009 1:02 pm
Objet: Re: Re : Re: how to compress dynamic dicom file
À: [hidden email]

> Hi Gerard,
>
> a plugin to concatenate one dynamic serial slices to another
>
>
> That's a job for the concatenator plugin:
> http://rsb.info.nih.gov/ij/plugins/concatenator.html
>
> Many other interesting plugins related to image stacks are listed
> under the
> 'stacks' section
> of the plugins page at: http://rsb.info.nih.gov/ij/plugins/index.html
>
> Jerome.
>
> On Sun, Feb 8, 2009 at 11:28 AM, maurel gerard
> <[hidden email]>wrote:
> > Thanks a lot
> > it is straigthforward
> >
> > Another question if possible :
> > do you know a plugin to concatenate one dynamic serial slices to
> another> one ?
> > thanks for your help
> >
> > gerard maurel
> >
> > ----- Message d'origine -----
> > De: Jerome Mutterer <[hidden email]
> > >javascript:parent.send('smtp')
> > Date: Samedi, Février 7, 2009 1:59 pm
> > Objet: Re: how to compress dynamic dicom file
> > À: [hidden email]
> >
> > > Dear Gerard,
> > > I think that the Grouped Z projector plugin might achieve exactly
> > > that. you
> > > can get it from:
> > > http://rsb.info.nih.gov/ij/plugins/group.html
> > >
> > > Jerome
> > >
> > > On Sat, Feb 7, 2009 at 10:35 AM, maurel gerard
> > > <[hidden email]>wrote:
> > > > Hi!
> > > > I want to transform a serial dynamic frames (i.e.  300 frames
> > > 64*64 16 bit)
> > > > in summed dynamic :
> > > > 30 frames and each one is a 10 frames sum (new frame 1 = sum
> from> > 1 to 10
> > > > initial frames; new frame 2 = sum from 11 to 20...)
> > > > thanks for your help
> > > > gerard maurel
> > > > saint antoine hospital paris france 331 4928 2807
> > > >
> > >
> > >
> >
>
>
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Re: how to compress dynamic dicom file

Wayne Rasband
In reply to this post by maurel gerard
> Hi!
> I want to transform a serial dynamic frames (i.e.  300 frames 64*64 16
> bit) in summed dynamic :
> 30 frames and each one is a 10 frames sum (new frame 1 = sum from 1 to
> 10 initial frames; new frame 2 = sum from 11 to 20...)
> thanks for your help
> gerard maurel
> saint antoine hospital paris france 331 4928 2807

Use the Image>Hyperstacks>Stack to Hyperstack command to convert to a
hyperstack with 10 slices and 30 frames, then use Image>Stacks>Z
Project to sum the slices in all 30 frames.

-wayne