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splitting time series into frames

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Nadia Cummins

splitting time series into frames

Dear ImageJ users,
Im sure there is a simple way to do it but I havent come across it:

All I need is to split my hyperstack (3 channels, z slices, time series) into individual z stacks for each time point. At the moment Im painfully doing it by going Stacks>tools>Create substack>frame 1, etc.

Surely there is a better way?

Thanks! Nadia

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Krs5

Re: splitting time series into frames

Dear Nadia,

I would write a little macro to do that. Just out of interest, why do you split into individual z stacks for each time point.

Kees

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Nadia Cummins
Sent: 27 August 2014 02:16
To: [hidden email]
Subject: splitting time series into frames

Dear ImageJ users,
Im sure there is a simple way to do it but I havent come across it:

All I need is to split my hyperstack (3 channels, z slices, time series) into individual z stacks for each time point. At the moment Im painfully doing it by going Stacks>tools>Create substack>frame 1, etc.

Surely there is a better way?

Thanks! Nadia

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Nadia Cummins

Re: splitting time series into frames

Hi Kees,

wow Im really surprised that its not already an option. Im doing that because my frames arent actually time points, they are individual tiles of a large region, which I need to stitch together. The files just happen to be displayed like that when I open them.

Nadia
________________________________________
From: ImageJ Interest Group [[hidden email]] on behalf of Straatman, Kees (Dr.) [[hidden email]]
Sent: Wednesday, August 27, 2014 5:30 PM
To: [hidden email]
Subject: Re: splitting time series into frames

Dear Nadia,

I would write a little macro to do that. Just out of interest, why do you split into individual z stacks for each time point.

Kees

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Nadia Cummins
Sent: 27 August 2014 02:16
To: [hidden email]
Subject: splitting time series into frames

Dear ImageJ users,
Im sure there is a simple way to do it but I havent come across it:

All I need is to split my hyperstack (3 channels, z slices, time series) into individual z stacks for each time point. At the moment Im painfully doing it by going Stacks>tools>Create substack>frame 1, etc.

Surely there is a better way?

Thanks! Nadia

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Straub, Volko A. (Dr.)

Re: splitting time series into frames

Hi Nadia,

The Bioformats Importer has an option to split time points (Split timepoints - Timelapse data will be opened as a separate stack for each timepoint.). It sounds like this is might do what you want to do.

Regards,
Volko

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Nadia Cummins
Sent: 27 August 2014 09:11
To: [hidden email]
Subject: Re: splitting time series into frames

Hi Kees,

wow Im really surprised that its not already an option. Im doing that because my frames arent actually time points, they are individual tiles of a large region, which I need to stitch together. The files just happen to be displayed like that when I open them.

Nadia
________________________________________
From: ImageJ Interest Group [[hidden email]] on behalf of Straatman, Kees (Dr.) [[hidden email]]
Sent: Wednesday, August 27, 2014 5:30 PM
To: [hidden email]
Subject: Re: splitting time series into frames

Dear Nadia,

I would write a little macro to do that. Just out of interest, why do you split into individual z stacks for each time point.

Kees

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Nadia Cummins
Sent: 27 August 2014 02:16
To: [hidden email]
Subject: splitting time series into frames

Dear ImageJ users,
Im sure there is a simple way to do it but I havent come across it:

All I need is to split my hyperstack (3 channels, z slices, time series) into individual z stacks for each time point. At the moment Im painfully doing it by going Stacks>tools>Create substack>frame 1, etc.

Surely there is a better way?

Thanks! Nadia

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Nadia Cummins

Re: splitting time series into frames

Great. Thank you!
________________________________________
From: ImageJ Interest Group [[hidden email]] on behalf of Straub, Volko A. (Dr.) [[hidden email]]
Sent: Wednesday, August 27, 2014 6:15 PM
To: [hidden email]
Subject: Re: splitting time series into frames

Hi Nadia,

The Bioformats Importer has an option to split time points (Split timepoints - Timelapse data will be opened as a separate stack for each timepoint.). It sounds like this is might do what you want to do.

Regards,
Volko

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Nadia Cummins
Sent: 27 August 2014 09:11
To: [hidden email]
Subject: Re: splitting time series into frames

Hi Kees,

wow Im really surprised that its not already an option. Im doing that because my frames arent actually time points, they are individual tiles of a large region, which I need to stitch together. The files just happen to be displayed like that when I open them.

Nadia
________________________________________
From: ImageJ Interest Group [[hidden email]] on behalf of Straatman, Kees (Dr.) [[hidden email]]
Sent: Wednesday, August 27, 2014 5:30 PM
To: [hidden email]
Subject: Re: splitting time series into frames

Dear Nadia,

I would write a little macro to do that. Just out of interest, why do you split into individual z stacks for each time point.

Kees

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Nadia Cummins
Sent: 27 August 2014 02:16
To: [hidden email]
Subject: splitting time series into frames

Dear ImageJ users,
Im sure there is a simple way to do it but I havent come across it:

All I need is to split my hyperstack (3 channels, z slices, time series) into individual z stacks for each time point. At the moment Im painfully doing it by going Stacks>tools>Create substack>frame 1, etc.

Surely there is a better way?

Thanks! Nadia

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html