I wrote a plugin to align manually up to 4 images.
http://imagejdocu.tudor.lu/imagej-documenation-wiki/plugins/align_4 Let me know of any problems. Cheers, Gabriel |
Is it possible to rotate one of the image during the alignment?
How to move faster one of the image to align to the other? MS ----- Original Message ----- From: "Gabriel Landini" <[hidden email]> To: <[hidden email]> Sent: Friday, September 22, 2006 11:44 AM Subject: new plugin: Align_4 >I wrote a plugin to align manually up to 4 images. > > http://imagejdocu.tudor.lu/imagej-documenation-wiki/plugins/align_4 > > Let me know of any problems. > Cheers, > > Gabriel |
In reply to this post by Gabriel Landini
When I use the specify tool to create a ROI, it appears to place the center
of the ROI on the specified X,Y coordinates. Is there a way to place the left or right side (Maximum X or Minimum X coordinate) of the ROI at a specific position? Thanks. Henry Barwood Associate Professor of Science, Earth Sciences Department of Math and Physics MSCX 312G Troy University Troy, Alabama [hidden email] |
> When I use the specify tool to create a ROI, it appears to place the
> center of the ROI on the specified X,Y coordinates. Is there a way > to place the left or right side (Maximum X or Minimum X coordinate) > of the ROI at a specific position? Thanks. Use the Edit>Selection>Specify command. It places the center of the selection at the specified coordinates if "Centered" is checked, otherwise it places places it at the upper left corner at the specified coordinates. -wayne |
I need to locate the X,Y coordinates of the center of a circle or arc. Is
there a macro or plugin that does this? Thanks. Henry Barwood Associate Professor of Science, Earth Sciences Department of Math and Physics MSCX 312G Troy University Troy, Alabama [hidden email] -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Wayne Rasband Sent: Friday, September 22, 2006 12:08 PM To: [hidden email] Subject: Re: Specify and position an ROI > When I use the specify tool to create a ROI, it appears to place the > center of the ROI on the specified X,Y coordinates. Is there a way > to place the left or right side (Maximum X or Minimum X coordinate) > of the ROI at a specific position? Thanks. Use the Edit>Selection>Specify command. It places the center of the selection at the specified coordinates if "Centered" is checked, otherwise it places places it at the upper left corner at the specified coordinates. -wayne |
An issue related to this came up once before, and since there were no
replies, it might be that no plugin exists for this. However, the math is pretty simple: With a center of x0, y0 and three points of x1,y1 etc: a = [[x1,y1,1], [x2,y2,1], [x3,y3,1]] d = -[[x1^2+y1^2, y1, 1], [x2^2+y2^2, y2, 1], [x3^2+y3^2, y3, 1]] e = [[x1^2+y1^2, x1, 1], [x2^2+y2^2, x2, 1], [x3^2+y3^2, x3, 1]] x0 = -d/(2*a) y0 = -e/(2*a) Jonathan On 9/22/06, Henry Barwood <[hidden email]> wrote: > I need to locate the X,Y coordinates of the center of a circle or arc. Is > there a macro or plugin that does this? Thanks. > > Henry Barwood > Associate Professor of Science, Earth Sciences > Department of Math and Physics > MSCX 312G > Troy University > Troy, Alabama > [hidden email] > > -----Original Message----- > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Wayne > Rasband > Sent: Friday, September 22, 2006 12:08 PM > To: [hidden email] > Subject: Re: Specify and position an ROI > > > When I use the specify tool to create a ROI, it appears to place the > > center of the ROI on the specified X,Y coordinates. Is there a way > > to place the left or right side (Maximum X or Minimum X coordinate) > > of the ROI at a specific position? Thanks. > > Use the Edit>Selection>Specify command. It places the center of the > selection at the specified coordinates if "Centered" is checked, > otherwise it places places it at the upper left corner at the specified > coordinates. > > -wayne |
In reply to this post by Malgorzata Swider
On Friday 22 September 2006 17:41, Malgorzata Swider wrote:
> Is it possible to rotate one of the image during the alignment? Not at the moment. One problem is that each time the image is rotated it is interpolated so it becomes fuzzy quite quickly (see the Align_Slice plugin which can do this). I wrote this to align successive shots in a microscope with a xy stage (which keeps coordinates aligned, so no rotation is needed). I'll think about adding this. > How to move faster one of the image to align to the other? Two ways: 1) Increase the step size with the slide bar (the default is 1 pixel, but one can increase it), or 2) use fiducial points (draw a line from the point to move in the active image to the target point in the rest of the image and press "Fiducial"). Cheers, Gabriel |
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